External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Transcriptomic profiling of interferon responses induced by IVT sgRNAs in CRI... GSE317890 Homo sapiens	360 samples	archive_table 51.3 MB	Not in ASAP	Details
cellxgene sc	Human tonsil nonlymphoid cells scRNA Publication DOI 00ff600e-6e2e-4d76-846f-0eec4f0ae417 Homo sapiens	363 cells x 19'517 genes	h5ad 5.76 MB	Not in ASAP	Details
geo bulk	Gene expression from laser capture microdissected epithelium and stroma durin... GSE143584 Homo sapiens	366 samples	counts_table 57.2 MB	Not in ASAP	Details
geo bulk	A comparative multiomic atlas of human immunity to multiple COVID-19 vaccines GSE320554 Homo sapiens	368 samples	counts_table 8.38 MB	Not in ASAP	Details
ebi_sc sc	The Global Molecular Landscape of dormant Hematopoietic Stem Cells Publication DOI E-MTAB-4547 Mus musculus	370 cells	h5ad 45 MB	Not in ASAP	Details
ebi_sc sc	RNA-sequencing for functional prediction of RNAs E-MTAB-6385 Mus musculus	375 cells	h5ad 78 MB	Not in ASAP	Details
ebi_sc sc	Mouse brown adipocyte single nucleus RNAseq with Smartseq2 Publication DOI E-MTAB-8561 Mus musculus	380 cells	h5ad 35 MB	Not in ASAP	Details
geo bulk	Phagosome-mediated activation of STING by purine and pyrimidine-based bacteri... GSE331176 Mus musculus	380 samples	archive_table 42 MB	Not in ASAP	Details
ebi_sc sc	Tracing the emergence of primordial germ cells from bilaminar disc rabbit emb... Publication DOI E-MTAB-10894 Oryctolagus cuniculus	381 cells	h5ad 43 MB	Not in ASAP	Details
cellxgene sc	Human cortical expansion involves diversification and specialization of supra... Publication DOI 86b37b3c-1e5e-46a9-aecc-2d95b6a38d4b Homo sapiens	385 cells x 34'863 genes	h5ad 29.2 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA-seq analysis of 389 cells of the small intestinal epithelium ... Publication DOI E-ENAD-14 Mus musculus	387 cells	h5ad 53 MB	Not in ASAP	Details
geo bulk	Topology and Evolution of Global Transcriptional Regulatory Networks Across t... GSE306886 Klebsiella pneumoniae	389 samples	counts_table 162 KB	Not in ASAP	Details
geo bulk	Localized PD-1 CAR T therapy reprograms neuroinflammation. GSE327497 Mus musculus; Homo sapiens	390 samples	archive_table 296 MB	Not in ASAP	Details
geo bulk	Identification of novel candidate neural genes for diet-induced obesity in ou... GSE330152 Rattus norvegicus	391 samples	counts_table 60.6 MB	Not in ASAP	Details
geo bulk	Gene expression profiling reveals two overarching types of anaplastic large c... GSE280480 Homo sapiens	393 samples	counts_table 17.7 MB	Not in ASAP	Details
cellxgene sc	Myeloid cells of human eye Publication DOI de17ac25-550a-4018-be75-bbb485a0636e Homo sapiens	395 cells x 56'710 genes	h5ad 10.6 MB	Not in ASAP	Details
geo bulk	Persistent dopamine-dependent remodeling of the neural transcriptome in respo... GSE298544 Homo sapiens; Mus musculus	397 samples	archive_table 20.9 GB	Not in ASAP	Details
geo bulk	Dichlorobenzene Rat S1500+ GSE333830 Rattus norvegicus	399 samples	counts_table 1.54 MB	Not in ASAP	Details
geo bulk	RNA-Seq profiling of pre- and on-treatment tumor samples from breast cancer p... GSE319641 Homo sapiens	401 samples	counts_table 43.5 MB	Not in ASAP	Details
ebi_sc sc	Malaria Cell Atlas: Single cell transcriptomics of malaria parasites Publication DOI E-CURD-3 Plasmodium falciparum 3D7	413 cells	h5ad 13 MB	Not in ASAP	Details
geo bulk	Mucosal inflammation and pre-existing antibodies define protection and diseas... GSE310241 Homo sapiens	414 samples	counts_table 5.39 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA-sequencing of human haemopoietic lympho-myeloid progenitor po... Publication DOI E-GEOD-100618 Homo sapiens	414 cells	h5ad 44 MB	Not in ASAP	Details
geo bulk	Astrocyte-derived cholesterol drives synaptic gene expression in developing n... GSE289420 Homo sapiens; Mus musculus	416 samples	counts_table 2.87 MB	Not in ASAP	Details
geo bulk	Longitudinal monitoring of cytoplasmic RBP-RNA interactions and transcriptome... GSE293919 Mus musculus; Homo sapiens	424 samples	archive_table 124 MB	Not in ASAP	Details
broad_scp sc	Glioblastoma intra-tumor heterogeneity Publication DOI SCP10	430 cells x 5'948 genes	counts_table 18.9 MB	Not in ASAP	Details