External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	The flame retardant triphenyl phosphate induces varying responses in genetica... GSE333520 Mus musculus	436 samples	counts_table 24.4 MB	Not in ASAP	Details
ebi_sc sc	Human dendritic cell subsets in acute skin inflammation Publication DOI E-MTAB-8498 Homo sapiens	448 cells	h5ad 48 MB	Not in ASAP	Details
hca sc	Spatial transcriptomic profiling of human retinoblastoma Publication DOI 1662accf-0e0c-48c4-9314-5aba063f2220::19535933-c420-4ab3-b534-5a157358de85 Homo sapiens	459 cells	h5 3.03 MB	Not in ASAP	Details
geo bulk	Mapping genetic modifiers of epimutation rates identifies VIM2/4 as dosage-se... GSE297108 Arabidopsis thaliana	476 samples	archive_table 113 GB	Not in ASAP	Details
geo bulk	Global and region-specific rules of airway epithelial development GSE215957 Mus musculus	478 samples	counts_table 4.24 MB	Not in ASAP	Details
ebi_sc sc	Genomic encoding of transcriptional burst kinetics E-MTAB-7098 Mus musculus	478 cells	h5ad 78 MB	Not in ASAP	Details
ebi_sc sc	Single cell analysis of emergent haematopoiesis in the human fetal bone marro... Publication DOI E-MTAB-9801 Homo sapiens	486 cells	h5ad 48 MB	Not in ASAP	Details
broad_scp sc	Mouse neural stem cells expressing BRAF oncogenes Publication DOI SCP468	487 cells x 14'372 genes	counts_table 33.5 MB	Not in ASAP	Details
cellxgene sc	Trachea Publication DOI a3959096-c197-4dcf-8d25-8383481bd1c4 Microcebus murinus	489 cells x 16'400 genes	h5ad 8.44 MB	ASAP116	Details
geo bulk	PU.1-Activated Genomic Regions Define Low-risk MDS Subsets Characterized by I... GSE298020 Homo sapiens	493 samples	archive_table 65 GB	Not in ASAP	Details
ebi_sc sc	Single-cell transcriptome analysis of avian neural crest migration reveals si... Publication DOI E-GEOD-108221 Gallus gallus	496 cells	h5ad 60 MB	Not in ASAP	Details
cellxgene sc	mouse_trunkTbx6WT_KO Publication DOI c233842b-9430-41b8-8ec6-4342428e43f3 Mus musculus	499 cells x 18'877 genes	h5ad 6.74 MB	Not in ASAP	Details
geo bulk	Investigating microenvironment in MDS II GSE264117 Homo sapiens	503 samples	counts_table 19.8 MB	Not in ASAP	Details
ebi_sc sc	Single cell RNA-seq of primary breast cancer cells and lymph node metastases ... Publication DOI E-GEOD-75688 Homo sapiens	520 cells	h5ad 104 MB	Not in ASAP	Details
geo bulk	Loss of meningeal lymphatic endothelial cells results in formation of a novel... GSE319344 Danio rerio	525 samples	counts_table 3.39 MB	Not in ASAP	Details
hca sc	Local and systemic responses to SARS-CoV-2 infection in children and adults Publication DOI 1538d572-bcb7-426b-8d2c-84f3a7f87bb0::7471c8ab-456d-4e3a-811e-355afcae1073 Homo sapiens	528 cells	h5 3.41 MB	Not in ASAP	Details
ebi_sc sc	Retinoic acid mediated neural and mesoderm specification during vertebrate tr... Publication DOI E-MTAB-5208 Mus musculus	536 cells	h5ad 101 MB	Not in ASAP	Details
ebi_sc sc	Single cell RNA-seq of human lung epithelial cells from 3 control and 6 idiop... Publication DOI E-GEOD-86618 Homo sapiens	537 cells	h5ad 116 MB	Not in ASAP	Details
ebi_sc sc	A versatile approach for assessing human stem cell-derived retinal progeny us... Publication DOI E-GEOD-98556 Homo sapiens	545 cells	h5ad 87 MB	Not in ASAP	Details
geo bulk	Stranded mRNA sequencing of chicken cecal tissue GSE286977 Gallus gallus	552 samples	counts_table 5.42 MB	Not in ASAP	Details
cellxgene sc	L5ET - neocortex: Human variation study (HVS) Publication DOI 5e7fff82-b8eb-4220-bf65-c6feb6765ea1 Homo sapiens	563 cells x 18'736 genes	h5ad 58.8 MB	Not in ASAP	Details
cellxgene sc	HTAPP-330-SMP-1082 scRNA-seq Publication DOI d7476ae2-e320-4703-8304-da5c42627e71 Homo sapiens	565 cells x 12'621 genes	h5ad 4.64 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA sequencing of OT-I CD8+ T cells after stimulation with differ... Publication DOI E-MTAB-6051 Mus musculus	566 cells	h5ad 47 MB	Not in ASAP	Details
geo bulk	Genome-scale perturb-seq in primary human CD4+ T cells reveals genes regulati... GSE314342 Homo sapiens	577 samples	archive_table 159 GB	Not in ASAP	Details
hca sc	Single-cell analyses of renal cell cancers reveal insights into tumor microen... Publication DOI 7c599029-7a3c-4b5c-8e79-e72c9a9a65fe::7a3da352-f9a9-47bd-b8db-bbc76322f997 Homo sapiens	578 cells	h5 1.96 MB	Not in ASAP	Details