External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
cellxgene sc	Endo - neocortex: Human variation study (HVS) Publication DOI 4859642c-d155-437b-adf5-83ca6c1bef67 Homo sapiens	582 cells x 18'736 genes	h5ad 50.5 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA-seq of of dermal fibroblasts (supplementary - human fibroblas... E-MTAB-7037 Homo sapiens	589 cells	h5ad 76 MB	Not in ASAP	Details
broad_scp sc	Pancreatic Ductal Adenocarcinoma reshapes sensory innervation: deciphering tr... SCP3142	603 cells x 18'337 genes	rds 74.9 MB	Not in ASAP	Details
geo bulk	Performance evaluation and methods comparison of transcriptomic-based novel a... GSE300878 Pimephales promelas	608 samples	counts_table 21.3 MB	Not in ASAP	Details
ebi_sc sc	Single cell RNA-seq of human pancreatic endocrine cells from Juvenile, adult ... Publication DOI E-GEOD-83139 Homo sapiens	619 cells	h5ad 114 MB	Not in ASAP	Details
geo bulk	Multi-organ RNA sequencing in TSOD mice GSE344155 Mus musculus	624 samples	counts_table 14.7 MB	Not in ASAP	Details
cellxgene sc	All cells with electrophysiological and morphological recordings Publication DOI 8f98c236-43f0-4dc4-985b-c304499f7b44 Mus musculus	628 cells x 40'656 genes	h5ad 23.4 MB	Not in ASAP	Details
ebi_sc sc	Single Cell RNA sequencing of Adult Human Breast Epithelial Cells - individua... Publication DOI E-CURD-7 Homo sapiens	631 cells	h5ad 71 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA-seq analysis of adult human breast epithelial cells Publication DOI E-ENAD-21 Homo sapiens	631 cells	h5ad 71 MB	Not in ASAP	Details
ebi_sc sc	Single-Cell Transcriptomics Sheds Light on the Identity and Metabolism of Dev... Publication DOI E-MTAB-11006 Arabidopsis thaliana	634 cells	h5ad 35 MB	Not in ASAP	Details
cellxgene sc	All cells with morphological recordings Publication DOI 341a0702-9d26-4d8a-b047-ab475f3b492e Mus musculus	636 cells x 40'656 genes	h5ad 23.5 MB	Not in ASAP	Details
cellxgene sc	VLMC - neocortex: Human variation study (HVS) Publication DOI f9cfac8d-bff6-47a2-a1f6-503827d375f5 Homo sapiens	637 cells x 18'736 genes	h5ad 53.7 MB	Not in ASAP	Details
ebi_sc sc	Analysis of single CD41 cell transcriptomes from Zebrafish Publication DOI E-MTAB-3947 Danio rerio	647 cells	h5ad 53 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA-seq analysis of human tonsil innate lymphoid cells Publication DOI E-GEOD-70580 Homo sapiens	648 cells	h5ad 74 MB	Not in ASAP	Details
cellxgene sc	PNS Publication DOI 703f00e6-b996-48e5-bc34-00c41b9876f4 Homo sapiens	649 cells x 16'035 genes	h5ad 11.9 MB	Not in ASAP	Details
geo bulk	LncRNAs coordinate doxycycline-induced gene expression response in human iPSC... GSE316178 Homo sapiens	658 samples	counts_table 24.4 MB	Not in ASAP	Details
geo bulk	Evolutionarily divergent transcriptomic programs in ovarian folliculogenesis ... GSE290089 Macaca fascicularis; Homo sapiens; Mus musculus	660 samples	archive_table 222 MB	Not in ASAP	Details
geo bulk	NuRD-Enabled CTCF-TET Crosstalk Orchestrates Epigenome Reprogramming and Geno... GSE178815 Homo sapiens; Mus musculus; Escherichia coli	664 samples	archive_table 6.85 GB	Not in ASAP	Details
hca sc	Spatial transcriptomic profiling of human retinoblastoma Publication DOI 1662accf-0e0c-48c4-9314-5aba063f2220::4089a269-4871-4b8b-aa42-9c126a472243 Homo sapiens	667 cells	h5 2.84 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA-seq analysis of a patient-derived xenograft model before and ... Publication DOI E-ENAD-20 Homo sapiens	667 cells	h5ad 86 MB	Not in ASAP	Details
broad_scp sc	Distinct subnetworks of the thalamic reticular nucleus (TRN) SCP344	671 cells x 23'420 genes	counts_table 12.9 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA-seq of dermal fibroblasts (5 human individuals - IFNB stimula... E-MTAB-7051 Homo sapiens	681 cells	h5ad 91 MB	Not in ASAP	Details
cellxgene sc	E9.0: Puck_220718_02 Publication DOI 6c0f2e18-3793-4d90-88b5-12d9d6f0f4e2 Mus musculus	703 cells x 27'368 genes	h5ad 9.11 MB	Not in ASAP	Details
cellxgene sc	Single-cell atlas of 24 hormone therapy naive localised prostate cancers -- B... Publication DOI 182f8181-172b-46c3-9bc3-575bf3bce91b Homo sapiens	706 cells x 32'397 genes	h5ad 11.1 MB	Not in ASAP	Details
geo bulk	MeCP2 stabilizes the glucocorticoid system in active chromatin regions [RNA-seq] GSE295530 Mus musculus	723 samples	counts_table 2.74 MB	Not in ASAP	Details