External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
broad_scp
sc
Pilocytic astrocytoma single cell RNA-seq Publication DOI
SCP271
 931 cells x 18'265 genes counts_table
11.3 MB
 Not in ASAP Details
cellxgene
sc
progressive_plasticity_during_crc_metastasis_kg182_tumor Publication DOI
743473de-0563-4809-b69c-872c8d0685e6
Homo sapiens
935 cells x 25'344 genes h5ad
20.8 MB
 Not in ASAP Details
broad_scp
sc
Spatial Reconstruction of Single-cell Gene Expression Data Publication DOI
SCP9
 945 cells x 10'945 genes counts_table
61.4 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq analysis of primary human conventional dendritic cells, a... Publication DOI
E-GEOD-89232
Homo sapiens
957 cells h5ad
65 MB
 Not in ASAP Details
cellxgene
sc
vasculature Publication DOI
389b1fd4-2b65-4f60-baba-feeb17507665
Mus musculus
959 cells x 51'714 genes h5ad
44.9 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell transcriptional analysis reveals innate lymphoid cell (ILC)-like ... Publication DOI
E-MTAB-7117
Danio rerio
966 cells h5ad
39 MB
 Not in ASAP Details
broad_scp
sc
Demo: cellranger_scCloud
SCP404
 976 cells x 15'451 genes counts_table
36.5 MB
 Not in ASAP Details
broad_scp
sc
Mouse Hypothalamus : PAG
SCP68
 985 cells x 18'098 genes counts_table
36.7 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq reveals differentiation hierarchy of normal human bone ma... Publication DOI
E-CURD-6
Homo sapiens
986 cells h5ad
206 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell transcriptional profiling of primary human dental follicle and de... Publication DOI
E-MTAB-10596
Homo sapiens
993 cells h5ad
47 MB
 Not in ASAP Details
hca
sc
A human embryonic limb cell atlas resolved in space and time Publication DOI
b176d756-62d8-4933-83a4-8b026380262f::3db80e12-c108-4762-9c09-d368204307c4
Homo sapiens
996 cells h5ad
64 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell transcriptional profiling of induced reprogramming trajectories Publication DOI
E-MTAB-7901
Mus musculus
1'009 cells h5ad
174 MB
 Not in ASAP Details
cellxgene
sc
Cholangiocytes from human healthy donor liver samples Publication DOI
0c9a8cfb-6649-4d52-b418-6d8e56bd7afe
Homo sapiens
1'011 cells x 32'596 genes h5ad
15.9 MB
 Not in ASAP Details
ebi_sc
sc
scRNA-seq to investigate endoderm differentiation from induced human pluripot... Publication DOI
E-MTAB-7008
Homo sapiens
1'012 cells h5ad
147 MB
 Not in ASAP Details
hca
sc
Human distal lung maps and lineage hierarchies reveal a bipotent progenitor Publication DOI
e5fe8274-3769-4d7d-aa35-6d33c226ab43::a827b42a-12eb-4850-a4d7-b6393855746f
Homo sapiens
1'045 cells h5
4.95 MB
 Not in ASAP Details
cellxgene
sc
Eye retina Publication DOI
125bc29a-677e-4aac-b2b6-5e23e66ef2a7
Microcebus murinus
1'062 cells x 16'400 genes h5ad
9.47 MB
 Details
ebi_sc
sc
Single cell RNA-seq of Pgc+ cells in homeostasis and upon injury Publication DOI
E-MTAB-10371
Mus musculus
1'063 cells h5ad
102 MB
 Not in ASAP Details
ebi_sc
sc
Single cell transcriptomics defines human islet cell signatures and reveals c... Publication DOI
E-ENAD-27
Homo sapiens
1'068 cells h5ad
205 MB
 Not in ASAP Details
cellxgene
sc
82 years old female - Airway Wash (1 day post-intubation) Publication DOI
b25f3834-69b3-4d87-a272-3938432d1f30
Homo sapiens
1'074 cells x 32'393 genes h5ad
17.6 MB
 Not in ASAP Details
broad_scp
sc
Atlas of human blood dendritic cells and monocytes Publication DOI
SCP43
 1'078 cells x 26'593 genes counts_table
137 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq analysis of larval zebrafish habenula from the gng8-GFP t... Publication DOI
E-GEOD-109159
Danio rerio
1'081 cells h5ad
95 MB
 Not in ASAP Details
hca
sc
Spatial transcriptomic profiling of human retinoblastoma Publication DOI
1662accf-0e0c-48c4-9314-5aba063f2220::c049474b-888f-4946-a7a4-78ecb03af10d
Homo sapiens
1'083 cells h5
5 MB
 Not in ASAP Details
cellxgene
sc
Single-cell atlas of 24 hormone therapy naive localised prostate cancers -- P... Publication DOI
20de8570-f01a-4016-9e0d-7e2bfb43932a
Homo sapiens
1'096 cells x 32'397 genes h5ad
15 MB
 Not in ASAP Details
hca
sc
Single-cell analyses of renal cell cancers reveal insights into tumor microen... Publication DOI
7c599029-7a3c-4b5c-8e79-e72c9a9a65fe::94dabb3a-b592-47a2-a7cb-82dd8643fad4
Homo sapiens
1'097 cells h5
2.48 MB
 Not in ASAP Details
hca
sc
Local and systemic responses to SARS-CoV-2 infection in children and adults Publication DOI
1538d572-bcb7-426b-8d2c-84f3a7f87bb0::29a4fdf5-911a-4ee5-a280-7409e1dc5db2
Homo sapiens
1'104 cells h5
6.55 MB
 Not in ASAP Details
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