External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
hca
sc
Local and systemic responses to SARS-CoV-2 infection in children and adults Publication DOI
1538d572-bcb7-426b-8d2c-84f3a7f87bb0::c1125969-e87f-450a-b1b5-a9c6b5f8ba24
Homo sapiens
1'109 cells h5
5.2 MB
 Not in ASAP Details
broad_scp
sc
Mouse Hypothalamus : MPOA
SCP67
 1'112 cells x 18'708 genes counts_table
43.6 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq of purified populations of stem cells and transit-amplify... Publication DOI
E-GEOD-90848
Mus musculus
1'119 cells h5ad
125 MB
 Not in ASAP Details
hca
sc
Spatial transcriptomic profiling of human retinoblastoma Publication DOI
1662accf-0e0c-48c4-9314-5aba063f2220::03a65166-97ed-408f-b08b-9380f777e0b7
Homo sapiens
1'132 cells h5
2.56 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell mapping reveals new markers and functions of lymphatic endothelia... Publication DOI
E-MTAB-8414
Mus musculus
1'135 cells h5ad
79 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq analysis of young and old murine hematopoietic stem cells Publication DOI
E-GEOD-87631
Mus musculus
1'141 cells h5ad
91 MB
 Not in ASAP Details
hca
sc
Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI
9d97f01f-9313-416e-9b07-560f048b2350::26da7e88-e8ac-460b-b63c-d9e20cec136f
Homo sapiens
1'160 cells h5
4.67 MB
 Not in ASAP Details
hca
sc
Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI
9d97f01f-9313-416e-9b07-560f048b2350::76d70dcc-8808-43e3-94c0-31f26db35364
Homo sapiens
1'165 cells h5
5.79 MB
 Not in ASAP Details
hca
sc
Local and systemic responses to SARS-CoV-2 infection in children and adults Publication DOI
1538d572-bcb7-426b-8d2c-84f3a7f87bb0::85d16fe5-baa4-486d-8f91-8e921231b584
Homo sapiens
1'169 cells h5
6.85 MB
 Not in ASAP Details
hca
sc
Human distal lung maps and lineage hierarchies reveal a bipotent progenitor Publication DOI
e5fe8274-3769-4d7d-aa35-6d33c226ab43::d62f7eec-7ab2-4e7d-94de-40de72e87d29
Homo sapiens
1'175 cells h5
4.34 MB
 Not in ASAP Details
geo
bulk
Quantification of Systemic Inflammation by a Gene Score Uncovers Relevant Fea...
GSE239775
Homo sapiens
1'177 samples archive_table
332 MB
 Not in ASAP Details
hca
sc
Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI
9d97f01f-9313-416e-9b07-560f048b2350::7fd64c79-0f20-4c1c-835f-8981793ad81a
Homo sapiens
1'190 cells h5
6.35 MB
 Not in ASAP Details
ebi_sc
sc
A spatially resolved single cell atlas of human gastrulation Publication DOI
E-MTAB-9388
Homo sapiens
1'195 cells h5ad
101 MB
 Not in ASAP Details
broad_scp
sc
Induction of a regulatory myeloid program in bacterial sepsis and severe COVI...
SCP1492
Homo sapiens
1'203 cells x 11'806 genes counts_table
10.5 MB
 Not in ASAP Details
cellxgene
sc
progressive_plasticity_during_crc_metastasis_kg183_tumor Publication DOI
ef0d813e-b9b4-4d30-8e54-b3939942c447
Homo sapiens
1'203 cells x 25'344 genes h5ad
26.5 MB
 Not in ASAP Details
ebi_sc
sc
RNA-seq of coding RNA from single cells derived from mouse embryos Publication DOI
E-MTAB-4079
Mus musculus
1'205 cells h5ad
201 MB
 Not in ASAP Details
broad_scp
sc
Hum2
SCP1083
 1'209 cells counts_table
70.3 MB
 Not in ASAP Details
hca
sc
Spatial multiomics map of trophoblast development in early pregnancy Publication DOI
aecfd908-674c-4d4e-b36e-0c1ceab02245::0f351af2-e128-4a33-8a4e-e9683abb3618
Homo sapiens
1'216 cells h5
5.97 MB
 Not in ASAP Details
hca
sc
Spatial multiomics map of trophoblast development in early pregnancy Publication DOI
aecfd908-674c-4d4e-b36e-0c1ceab02245::31b2ae18-f2a4-49c9-910d-0af29e429b6c
Homo sapiens
1'216 cells h5ad
28.8 MB
 Not in ASAP Details
broad_scp
sc
Molecular organization of autonomic, respiratory, and spinally-projecting neu...
SCP2307
Mus musculus
1'226 cells x 32'285 genes rds
40.8 MB
 Not in ASAP Details
hca
sc
Spatial transcriptomic profiling of human retinoblastoma Publication DOI
1662accf-0e0c-48c4-9314-5aba063f2220::193e4c5b-8248-49ad-8b1c-1b11ea2ee7a1
Homo sapiens
1'234 cells h5
2.66 MB
 Not in ASAP Details
hca
sc
A human embryonic limb cell atlas resolved in space and time Publication DOI
b176d756-62d8-4933-83a4-8b026380262f::3d4a2f51-5cfc-49a8-b6b2-bd86b1b9b1b8
Homo sapiens
1'235 cells h5ad
62 MB
 Not in ASAP Details
cellxgene
sc
Aging mouse ovary: Endothelial/epithelial cells Publication DOI
1e8d16a4-2288-41e1-b48c-8bc876fc0de0
Mus musculus
1'248 cells x 20'053 genes h5ad
65.5 MB
 Not in ASAP Details
cellxgene
sc
B cells from human healthy donor liver samples Publication DOI
4993d61c-1d04-4630-9c61-8d9431f39adc
Homo sapiens
1'250 cells x 32'596 genes h5ad
17.3 MB
 Not in ASAP Details
hca
sc
Local and systemic responses to SARS-CoV-2 infection in children and adults Publication DOI
1538d572-bcb7-426b-8d2c-84f3a7f87bb0::c0454d6e-9cb2-426d-a14f-e6154a1ac485
Homo sapiens
1'269 cells h5
7.05 MB
 Not in ASAP Details
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