External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
ebi_sc
sc
Single-cell RNA sequencing of escort cells (ECs) in Drosophila ovaries Publication DOI
E-GEOD-141701
Drosophila melanogaster
1'270 cells h5ad
48 MB
 Not in ASAP Details
hca
sc
A human embryonic limb cell atlas resolved in space and time Publication DOI
b176d756-62d8-4933-83a4-8b026380262f::07df03e8-72c7-4ee4-8ce0-39f67b36c5c9
Homo sapiens
1'279 cells h5ad
69.4 MB
 Not in ASAP Details
broad_scp
sc
Hum1
SCP1082
 1'279 cells counts_table
74.9 MB
 Not in ASAP Details
cellxgene
sc
Mouse Craniofacial Expression Cranial Neural Crest Publication DOI
4d4c7412-9438-4508-a444-294762e8a00a
Mus musculus
1'281 cells x 21'137 genes h5ad
18.1 MB
 Not in ASAP Details
cellxgene
sc
Alpha Publication DOI
9fcd3812-d192-46d2-bf55-872f4b76486a
Mus musculus
1'284 cells x 30'149 genes h5ad
25.3 MB
 Not in ASAP Details
cellxgene
sc
Urethral luminal epithelia are castration-insensitive cells of the proximal p... Publication DOI
df287f8d-f50d-4620-ab96-489d559e6adc
Homo sapiens
1'295 cells x 22'340 genes h5ad
15.3 MB
 Not in ASAP Details
broad_scp
sc
A transcriptomic taxonomy of adult mouse anterior lateral motor cortex (ALM)
SCP17
 1'301 cells x 45'764 genes counts_table
157 MB
 Not in ASAP Details
cellxgene
sc
All cells with electrophysiological recordings Publication DOI
bf6a5c78-5a2e-4e34-93f3-7be5d127d879
Mus musculus
1'320 cells x 40'656 genes h5ad
41.1 MB
 Not in ASAP Details
cellxgene
sc
Steady-state B cells - scRNA-seq Publication DOI
a5d95a42-0137-496f-8a60-101e17f263c8
Homo sapiens
1'324 cells x 18'946 genes h5ad
9.23 MB
 Not in ASAP Details
cellxgene
sc
74 years old female - Airway Wash (5 days post-intubation) Publication DOI
eec804b9-2ae5-44f0-a1b5-d721e21257de
Homo sapiens
1'324 cells x 32'393 genes h5ad
15.2 MB
 Not in ASAP Details
broad_scp
sc
Phenotypic variation of transcriptomic cell types in mouse motor cortex Publication DOI
SCP2674
Mus musculus
1'329 cells x 42'466 genes counts_table
386 MB
 Not in ASAP Details
hca
sc
Local and systemic responses to SARS-CoV-2 infection in children and adults Publication DOI
1538d572-bcb7-426b-8d2c-84f3a7f87bb0::5fef57d5-8773-4ef1-9528-a244eaf8fbce
Homo sapiens
1'329 cells h5
5.73 MB
 Not in ASAP Details
cellxgene
sc
E9.0: Puck_220718_10 Publication DOI
e545cafe-80f4-494e-bbb1-e95c86955756
Mus musculus
1'336 cells x 27'368 genes h5ad
10.8 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq of naive and primed human embryonic stem cells Publication DOI
E-MTAB-6819
Homo sapiens
1'343 cells h5ad
183 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-Seq data of zebrafish blood cells Publication DOI
E-MTAB-5530
Danio rerio
1'354 cells h5ad
68 MB
 Not in ASAP Details
cellxgene
sc
Healthy human liver: hepatic stellate cells Publication DOI
524e045e-e74c-4e00-9884-d5c3bef3d862
Homo sapiens
1'374 cells x 32'596 genes h5ad
15 MB
 Not in ASAP Details
cellxgene
sc
Cone cells of human eye Publication DOI
d95ab381-2b7c-4885-b168-0097ed4e397f
Homo sapiens
1'378 cells x 56'710 genes h5ad
23.8 MB
 Not in ASAP Details
hca
sc
A human embryonic limb cell atlas resolved in space and time Publication DOI
b176d756-62d8-4933-83a4-8b026380262f::9ba03b11-fcef-4dc9-a6f2-36231e809033
Homo sapiens
1'381 cells h5ad
65.1 MB
 Not in ASAP Details
hca
sc
Spatial transcriptomic profiling of human retinoblastoma Publication DOI
1662accf-0e0c-48c4-9314-5aba063f2220::18c5862e-532a-4e9a-b794-fd07dd622c31
Homo sapiens
1'382 cells h5
3.81 MB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the pancreas Publication DOI
e2309842-c77c-49a7-ada2-c2c655f6bd68
Danio rerio
1'387 cells x 32'031 genes h5ad
5.16 MB
 Not in ASAP Details
broad_scp
sc
Dorsal
SCP1081
 1'389 cells counts_table
74.7 MB
 Not in ASAP Details
hca
sc
Local and systemic responses to SARS-CoV-2 infection in children and adults Publication DOI
1538d572-bcb7-426b-8d2c-84f3a7f87bb0::10e22359-5391-4751-94e1-9162319763a5
Homo sapiens
1'397 cells h5
7.45 MB
 Not in ASAP Details
broad_scp
sc
Single nucleus RNA-seq of cell diversity in the adult mouse hippocampus (sNuc... Publication DOI
SCP1
 1'402 cells x 25'392 genes counts_table
204 MB
 Not in ASAP Details
ebi_sc
sc
Single cell analysis of human fetal liver captures the transcriptional profil... Publication DOI
E-GEOD-130473
Homo sapiens
1'404 cells h5ad
106 MB
 Not in ASAP Details
hca
sc
Single-cell analyses of renal cell cancers reveal insights into tumor microen... Publication DOI
7c599029-7a3c-4b5c-8e79-e72c9a9a65fe::f1fe0fc8-46bf-49b7-871a-994cc4b42002
Homo sapiens
1'410 cells h5
3.81 MB
 Not in ASAP Details
of 674