External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Stellate cells from human healthy donor liver samples Publication DOI
e347396c-a7ff-4691-9f7a-99a43555ca18
Homo sapiens
1'417 cells x 32'596 genes h5ad
14 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA sequencing of stem cell-derived retinal ganglion cells Publication DOI
E-MTAB-6108
Homo sapiens
1'427 cells h5ad
87 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA sequencing of human steady-state immune cells from the lamina... Publication DOI
E-CURD-89
Homo sapiens
1'436 cells h5ad
89 MB
 Not in ASAP Details
cellxgene
sc
Pax6 - neocortex: Human variation study (HVS) Publication DOI
78f40dd6-ed22-470d-8547-6fb5746c25da
Homo sapiens
1'465 cells x 18'736 genes h5ad
130 MB
 Not in ASAP Details
hca
sc
Spatial transcriptomic profiling of human retinoblastoma Publication DOI
1662accf-0e0c-48c4-9314-5aba063f2220::1fe53de9-d74e-42cc-923b-e7e13e3b8dbd
Homo sapiens
1'485 cells h5
4.44 MB
 Not in ASAP Details
ebi_sc
sc
Melanoma-derived extracellular vesicles mediate lymphatic remodeling and impa... Publication DOI
E-MTAB-10434
Mus musculus
1'489 cells h5ad
79 MB
 Not in ASAP Details
cellxgene
sc
Sst Chodl - MTG: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
81e91ff8-f619-4ad1-a0c3-b45e1dc63f68
Homo sapiens
1'496 cells x 35'483 genes h5ad
43.8 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA-seq of mouse lung vascular transcriptomes Publication DOI
E-GEOD-99235
Mus musculus
1'504 cells h5ad
145 MB
 Not in ASAP Details
ebi_sc
sc
Unraveling Transcriptomic Heterogeneity in the Human Dermal Blood Vascular En... Publication DOI
E-MTAB-10137
Homo sapiens
1'511 cells h5ad
97 MB
 Not in ASAP Details
broad_scp
sc
ventral
SCP1086
 1'517 cells counts_table
72.2 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq reveal lineage formation and X-chromosome dosage compensa... Publication DOI
E-MTAB-3929
Homo sapiens
1'519 cells h5ad
407 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq analysis of 1,522 cells of the small intestinal epithelium Publication DOI
E-ENAD-13
Mus musculus
1'521 cells h5ad
191 MB
 Not in ASAP Details
ebi_sc
sc
A single-cell transcriptome of the developing visceral muscle of Drosophila m... Publication DOI
E-ENAD-58
Drosophila melanogaster
1'550 cells h5ad
21 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-sequencing resolves a CD4+ T cell fate bifurcation Publication DOI
E-MTAB-4388
Mus musculus
1'556 cells h5ad
122 MB
 Not in ASAP Details
cellxgene
sc
Colon Publication DOI
f71eeea6-aa46-4d14-a53e-fb862806acee
Microcebus murinus
1'560 cells x 16'400 genes h5ad
12.9 MB
 Details
cellxgene
sc
immune Publication DOI
1398f3a9-b48b-431a-a5f2-d4a1931c4b45
Mus musculus
1'562 cells x 51'714 genes h5ad
47.1 MB
 Not in ASAP Details
hca
sc
Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI
9d97f01f-9313-416e-9b07-560f048b2350::73cf6413-5855-4a89-9e62-c332b721a581
Homo sapiens
1'589 cells h5
8 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA-seq of human islet cells from non diabetic and type II diabet... Publication DOI
E-GEOD-81608
Homo sapiens
1'600 cells h5ad
252 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq of long-term hematopoietic stem cells from young and aged... Publication DOI
E-GEOD-100426
Mus musculus
1'605 cells h5ad
156 MB
 Not in ASAP Details
cellxgene
sc
Microglia Publication DOI
fe2eecbc-977a-4aec-9196-f89c3281d11c
Homo sapiens
1'621 cells x 60'305 genes h5ad
35 MB
 Not in ASAP Details
cellxgene
sc
Retinal pigment epithelial cells of human eye Publication DOI
9cfee1e6-b24f-433d-a269-f01841655d6a
Homo sapiens
1'635 cells x 56'710 genes h5ad
25 MB
 Not in ASAP Details
cellxgene
sc
Cilium Publication DOI
cdefb878-7f00-4b9d-9eda-b3652cfac0c8
Homo sapiens
1'641 cells x 19'609 genes h5ad
33.4 MB
 Not in ASAP Details
hca
sc
Single-cell analyses of renal cell cancers reveal insights into tumor microen... Publication DOI
7c599029-7a3c-4b5c-8e79-e72c9a9a65fe::1fc8c3ee-191c-4733-8b2a-4abc888b22c2
Homo sapiens
1'644 cells h5
2.6 MB
 Not in ASAP Details
cellxgene
sc
Urethral luminal epithelia are castration-insensitive cells of the proximal p... Publication DOI
a810e511-c18b-4b2a-8fdf-98a6a0d433a7
Mus musculus
1'647 cells x 19'344 genes h5ad
16.9 MB
 Not in ASAP Details
hca
sc
Single-cell analyses of renal cell cancers reveal insights into tumor microen... Publication DOI
7c599029-7a3c-4b5c-8e79-e72c9a9a65fe::e276f81c-58bc-4a64-8306-f5db25898f31
Homo sapiens
1'660 cells h5
6.21 MB
 Not in ASAP Details
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