External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
L6ITCar3 - neocortex: Human variation study (HVS) Publication DOI
0087cde2-967d-4f7c-8e6e-40e4c9ad1891
Homo sapiens
5'399 cells x 18'736 genes h5ad
495 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_240108_11' Publication DOI
1842a283-e492-4dae-afcc-a32ef8c1bfeb
Mus musculus
5'432 cells x 29'286 genes h5ad
16.7 MB
 Not in ASAP Details
cellxgene
sc
scRNA-seq data of mouse oviduct collected at the estrus stage Publication DOI
0f788857-3015-4fb9-912d-2545f2779c07
Mus musculus
5'440 cells x 27'064 genes h5ad
513 MB
 Not in ASAP Details
broad_scp
sc
Single cell analysis of the normal mouse aorta reveals functionally distinct...
SCP289
 5'451 cells x 9'260 genes counts_table
85.1 MB
 Not in ASAP Details
cellxgene
sc
E9.0: Puck_220718_13 Publication DOI
62567ddb-2742-4a32-bd1a-c308e7b28093
Mus musculus
5'452 cells x 27'368 genes h5ad
22.5 MB
 Not in ASAP Details
cellxgene
sc
HTAPP-812-SMP-8239 scRNA-seq Publication DOI
1884e651-5f7f-4e6c-a71a-843ba272aaf4
Homo sapiens
5'463 cells x 19'831 genes h5ad
50.8 MB
 Not in ASAP Details
cellxgene
sc
Endothelium Publication DOI
810ac45f-8969-4698-b42c-652f802f75c2
Homo sapiens
5'467 cells x 20'484 genes h5ad
67.4 MB
 Not in ASAP Details
cellxgene
sc
Mammary gland Publication DOI
5fc8c956-6385-45a0-86c7-f1c987b9a27c
Microcebus murinus
5'468 cells x 16'400 genes h5ad
24.4 MB
 Details
cellxgene
sc
Single cell transcriptomic profiling identifies molecular phenotypes of newbo... Publication DOI
6e00ccf7-0749-46ef-a999-dba785630d52
Homo sapiens
5'499 cells x 29'371 genes h5ad
45.3 MB
 Not in ASAP Details
cellxgene
sc
Molecular characterization of selectively vulnerable neurons in Alzheimer’s D... Publication DOI
06b91002-4d3d-4d2e-8484-20c3b31e232c
Homo sapiens
5'500 cells x 31'997 genes h5ad
14.4 MB
 Not in ASAP Details
broad_scp
sc
40dpf ovary STROMAL Publication DOI
SCP929
 5'525 cells x 16'769 genes counts_table
227 MB
 Not in ASAP Details
cellxgene
sc
E9.0: Puck_220718_18 Publication DOI
5e708434-f8a5-462e-b82f-007ba023d274
Mus musculus
5'535 cells x 27'368 genes h5ad
21.6 MB
 Not in ASAP Details
cellxgene
sc
Molecular characterization of selectively vulnerable neurons in Alzheimer’s D... Publication DOI
9f1049ac-f8b7-45ad-8e31-6e96c3e5058f
Homo sapiens
5'572 cells x 31'997 genes h5ad
11.3 MB
 Not in ASAP Details
hca
sc
Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. Publication DOI
b91c623b-1945-4727-b167-0a93027b0d3f::35e6bf04-5e69-46fc-8fe6-3b4e273922bf
Homo sapiens
5'600 cells h5
14.6 MB
 Not in ASAP Details
cellxgene
sc
74 years old female - Fresh PBMCs (3 days post-intubation) Publication DOI
84230ea4-998d-4aa8-8456-81dd54ce23af
Homo sapiens
5'608 cells x 32'393 genes h5ad
53.7 MB
 Not in ASAP Details
cellxgene
sc
Visceral Publication DOI
eababacc-8e34-4596-892a-9edeed9dd304
Mus musculus
5'613 cells x 30'149 genes h5ad
84.7 MB
 Not in ASAP Details
cellxgene
sc
Single cell analysis of mouse and human prostate reveals novel fibroblasts wi... Publication DOI
43770b51-4b0e-4180-a83b-e77664c60736
Mus musculus
5'617 cells x 20'634 genes h5ad
83.5 MB
 Not in ASAP Details
cellxgene
sc
A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymph... Publication DOI
26ae14da-9e5f-4d18-abae-18a5a328feef
Mus musculus
5'625 cells x 14'856 genes h5ad
251 MB
 Not in ASAP Details
broad_scp
sc
Single cell T1D - knockin (10w, 10w_M98A)
SCP78
 5'634 cells x 17'188 genes counts_table
94.1 MB
 Not in ASAP Details
hca
sc
Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI
9d97f01f-9313-416e-9b07-560f048b2350::bf50fb7b-d6e1-4fce-96be-1bf8fa416551
Homo sapiens
5'653 cells h5
25.8 MB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the other Publication DOI
75951e53-dda0-4908-91f6-00fb3d108fd3
Danio rerio
5'666 cells x 32'031 genes h5ad
9.45 MB
 Not in ASAP Details
hca
sc
Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. Publication DOI
b91c623b-1945-4727-b167-0a93027b0d3f::72f07a14-2d43-42f0-b4ed-164ea407f0a6
Homo sapiens
5'670 cells h5
15.2 MB
 Not in ASAP Details
cellxgene
sc
66 years old female - Fresh PBMCs (4 days post-intubation) Publication DOI
ed9e9f96-4f08-49d2-bef5-b2c29adf3edc
Homo sapiens
5'696 cells x 32'393 genes h5ad
58.8 MB
 Not in ASAP Details
cellxgene
sc
E9.0: Puck_220718_14 Publication DOI
88c9fffe-c70d-4f42-ba43-23cc3cd6bb32
Mus musculus
5'697 cells x 27'368 genes h5ad
24 MB
 Not in ASAP Details
cellxgene
sc
e18.5 glutamatergic lineage Publication DOI
a14a995b-2f1d-40df-8f61-ab2754cac630
Mus musculus
5'729 cells x 30'198 genes h5ad
74.6 MB
 Not in ASAP Details
of 674