External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
An integrated transcriptomic and epigenomic atlas of mouse primary motor cort... Publication DOI
d622cee4-56e1-44ba-8b05-fd2f0f2032e6
Mus musculus
6'288 cells x 35'211 genes h5ad
366 MB
 Not in ASAP Details
cellxgene
sc
Healthy human liver: liver sinusoidal endothelial cells Publication DOI
bf176af2-4432-4391-9b35-e21bd86ca4f8
Homo sapiens
6'289 cells x 32'596 genes h5ad
47.5 MB
 Not in ASAP Details
cellxgene
sc
Ovarian tissue from donor 5 Publication DOI
d3d4baff-d142-4f13-acc6-96a4ef6a3e95
Homo sapiens
6'339 cells x 35'477 genes h5ad
69 MB
 Not in ASAP Details
broad_scp
sc
single cell RNA-seq analysis of astrocytoma Publication DOI
SCP50
 6'341 cells x 23'686 genes counts_table
470 MB
 Not in ASAP Details
cellxgene
sc
Gland Immune Atlas Publication DOI
9aef5aa0-03b0-4d74-a7b3-64b80184ea1d
Homo sapiens
6'362 cells x 35'377 genes h5ad
29.4 MB
 Not in ASAP Details
broad_scp
sc
Multi-species single-cell transcriptomic analysis of ocular compartment regul...
SCP1388
Homo sapiens
6'408 cells x 22'805 genes counts_table
454 MB
 Not in ASAP Details
cellxgene
sc
Puck 'A0029_042' Publication DOI
ff356b4d-9231-44ec-a18a-9dc8db3d47e4
Mus musculus
6'430 cells x 29'286 genes h5ad
15.3 MB
 Not in ASAP Details
cellxgene
sc
Puck 'A0029_047' Publication DOI
32829703-dd75-43eb-aafb-c8d07be4ff09
Mus musculus
6'448 cells x 29'286 genes h5ad
13 MB
 Not in ASAP Details
hca
sc
Single-cell analyses of renal cell cancers reveal insights into tumor microen... Publication DOI
7c599029-7a3c-4b5c-8e79-e72c9a9a65fe::887d9bd9-bb84-43d0-8111-8aea324a5cb4
Homo sapiens
6'453 cells h5
25.6 MB
 Not in ASAP Details
cellxgene
sc
Neural_crest
186c1742-7f10-424e-a1d9-87ed7c4d6024
Homo sapiens
6'465 cells x 32'397 genes h5ad
45.7 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_230714_23' Publication DOI
676443d9-2b9f-472d-a53d-350d37000288
Mus musculus
6'469 cells x 29'286 genes h5ad
15.1 MB
 Not in ASAP Details
cellxgene
sc
Visium spatial - AX Publication DOI
92cf7163-4b7b-460b-9751-afd96193a163
Homo sapiens
6'497 cells x 32'383 genes h5ad
61.6 MB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the motor neurons Publication DOI
cee31021-b403-47f0-9fd7-96f9448a1062
Danio rerio
6'512 cells x 32'031 genes h5ad
9.04 MB
 Not in ASAP Details
cellxgene
sc
Testes Publication DOI
81685aa6-2b1b-498f-89f0-4c26052ea642
Microcebus murinus
6'528 cells x 16'400 genes h5ad
89 MB
 Details
cellxgene
sc
Tongue Publication DOI
8aec6385-517c-4298-8e44-8be142fdb27f
Microcebus murinus
6'541 cells x 16'400 genes h5ad
57.7 MB
 Details
cellxgene
sc
scRNA-seq data of human dental pulp Publication DOI
bdd109f1-ca27-45dc-bb9f-473008449428
Homo sapiens
6'560 cells x 19'960 genes h5ad
88.7 MB
 Not in ASAP Details
cellxgene
sc
E8.5_rep1: 201104_07 Publication DOI
ef962681-c4a1-4e7c-b43e-a58a67d3a115
Mus musculus
6'562 cells x 27'368 genes h5ad
36.5 MB
 Not in ASAP Details
hca
sc
Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI
9d97f01f-9313-416e-9b07-560f048b2350::72c9d817-9908-48f6-b267-faf97b09e9c0
Homo sapiens
6'575 cells h5
13.9 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_240108_10' Publication DOI
ac227edd-f515-4ef2-9aae-bac8e4097f49
Mus musculus
6'608 cells x 29'286 genes h5ad
23.8 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell transcriptome analysis of gata5GFP labelled WT and Gata5/6 defici... Publication DOI
E-MTAB-9193
Danio rerio
6'624 cells h5ad
190 MB
 Not in ASAP Details
cellxgene
sc
Puck 'A0064_045' Publication DOI
f038c35a-1b0d-4839-925c-98a3a803b8a7
Mus musculus
6'628 cells x 29'286 genes h5ad
15.2 MB
 Not in ASAP Details
ebi_sc
sc
Melanoma infiltration of stromal and immune cells
E-EHCA-2
Mus musculus
6'638 cells h5ad
343 MB
 Not in ASAP Details
cellxgene
sc
In vitro differentiation of mouse Ccno-/- ependymal cells (DIV3), MCC lineage... Publication DOI
04e67014-9221-419a-b71e-12a5ea0ffff4
Mus musculus
6'639 cells x 31'729 genes h5ad
118 MB
 Not in ASAP Details
hca
sc
SARS-CoV-2 infection of the oral cavity and saliva. Publication DOI
dcbb50d1-9acf-4f70-9fda-b1f63a948c49::62188b1d-b363-4557-8d20-970b346d474f
Homo sapiens
6'655 cells h5ad
31.3 MB
 Not in ASAP Details
ebi_sc
sc
scRNA-seq analysis of lung CD64-expressing mononuclear cells, patrolling and ... Publication DOI
E-MTAB-7678
Mus musculus
6'666 cells h5ad
185 MB
 Not in ASAP Details
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