External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Pooled NAFLD mouse liver Visium data Publication DOI
5f729037-e1d5-41ea-93f9-1fdc3957be3f
Mus musculus
6'671 cells x 30'201 genes h5ad
150 MB
 Not in ASAP Details
cellxgene
sc
Mouse tracheal epithelial cells at air/liquid interface for one, three, nine,... Publication DOI
567460ab-1af8-4df7-bf61-4aad9da2f94c
Mus musculus
6'674 cells x 30'146 genes h5ad
383 MB
 Not in ASAP Details
ebi_sc
sc
Haematopoietic stem and progenitor cells are present in healthy gingiva tissue Publication DOI
E-MTAB-10050
Mus musculus
6'686 cells h5ad
236 MB
 Not in ASAP Details
cellxgene
sc
Single-cell atlas of 24 hormone therapy naive localised prostate cancers -- S... Publication DOI
83d62c7b-3439-47ba-988c-d99e705bda12
Homo sapiens
6'709 cells x 32'397 genes h5ad
76.1 MB
 Not in ASAP Details
ebi_sc
sc
Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation Publication DOI
E-ENAD-30
Arabidopsis thaliana
6'727 cells h5ad
189 MB
 Not in ASAP Details
broad_scp
sc
Single cell RNA-seq of pediatric ependymoma
SCP596
 6'739 cells x 20'447 genes counts_table
94.1 MB
 Not in ASAP Details
cellxgene
sc
E8.5_rep1: 201104_08 Publication DOI
4c721895-e5cc-4d5c-ba93-ce34754f7396
Mus musculus
6'744 cells x 27'368 genes h5ad
44 MB
 Not in ASAP Details
broad_scp
sc
HCA LungMAP COVID-19 Skin Cross Tissue
SCP898
 6'757 cells x 27 genes counts_table
25.8 KB
 Not in ASAP Details
cellxgene
sc
Adipose tissue — A single-cell transcriptomic atlas characterizes ageing tiss... Publication DOI
76544818-bc5b-4a0d-87d4-40dde89545cb
Mus musculus
6'777 cells x 17'943 genes h5ad
120 MB
 Not in ASAP Details
cellxgene
sc
E8.5_rep1: 201104_19 Publication DOI
fa76879f-8af0-439d-a4af-bf9660b98293
Mus musculus
6'780 cells x 27'368 genes h5ad
51.7 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_240129_36' Publication DOI
b5220e75-4f9c-447b-8f61-4416276b79fb
Mus musculus
6'789 cells x 29'286 genes h5ad
24.2 MB
 Not in ASAP Details
hca
sc
Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. Publication DOI
b91c623b-1945-4727-b167-0a93027b0d3f::866a15eb-f855-4f97-b977-779d1ab1a396
Homo sapiens
6'792 cells h5
17.6 MB
 Not in ASAP Details
broad_scp
sc
Aquaporin-1 sustains lymphangiogenic responses in inflammatory microenvironments Publication DOI
SCP3668
Mus musculus
6'802 cells x 10'794 genes rds
201 MB
 Not in ASAP Details
ebi_sc
sc
RNA-seq of RBC depleted whole blood from COVID-19 patients and controls Publication DOI
E-MTAB-9221
Homo sapiens
6'807 cells h5ad
176 MB
 Not in ASAP Details
cellxgene
sc
Fetal kidney dataset: immune Publication DOI
2d31c0ca-0233-41ce-bd1a-05aa8404b073
Homo sapiens
6'847 cells x 32'088 genes h5ad
60.1 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Thalamus (THM) - lateral nuclear complex of thalamus (LNC) - vent... Publication DOI
f6d9f2ad-5ec7-4d53-b7f0-ceb0e7bcd181
Homo sapiens
6'877 cells x 58'232 genes h5ad
51.5 MB
 Not in ASAP Details
broad_scp
sc
Multitissue Single-Cell Analysis Reveals Differential Tissue, Cellular, and M...
SCP1403
Mus musculus
6'920 cells x 25'956 genes counts_table
399 MB
 Not in ASAP Details
cellxgene
sc
E8.5_rep1: 201104_22 Publication DOI
87e59b09-4283-4a3c-b05d-aed621746c8a
Mus musculus
6'931 cells x 27'368 genes h5ad
55 MB
 Not in ASAP Details
cellxgene
sc
Myeloid Publication DOI
0ba16f4b-cb87-4fa3-9363-19fc51eec6e7
Homo sapiens
6'947 cells x 19'786 genes h5ad
79.9 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_240108_14' Publication DOI
6280433a-1400-4c8a-be9a-470b4c69d590
Mus musculus
6'967 cells x 29'286 genes h5ad
25 MB
 Not in ASAP Details
broad_scp
sc
Synovial sarcoma
SCP167
 6'975 cells x 23'686 genes counts_table
131 MB
 Not in ASAP Details
hca
sc
Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. Publication DOI
b91c623b-1945-4727-b167-0a93027b0d3f::3168d209-ef36-45ca-a7d0-d4b5dace9c61
Homo sapiens
6'979 cells h5
22.1 MB
 Not in ASAP Details
cellxgene
sc
E8.5_rep1: 201104_18 Publication DOI
02419ebc-fd75-4629-ba13-9b26e3be851c
Mus musculus
6'984 cells x 27'368 genes h5ad
53.7 MB
 Not in ASAP Details
cellxgene
sc
mouse pancreatic islet cells Publication DOI
07f14e26-ff0d-43c4-bfe3-bf1a94dc73c3
Mus musculus
7'011 cells x 27'064 genes h5ad
80.3 MB
 Not in ASAP Details
cellxgene
sc
66 years old female - Airway Wash (2 days post-intubation) Publication DOI
bd3e3487-c1e6-4298-b9de-8bdcf3f938d7
Homo sapiens
7'025 cells x 32'393 genes h5ad
78.7 MB
 Not in ASAP Details
of 674