External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Visium spatial - RA Publication DOI
affa05cf-6f7a-4868-87d9-a33664680139
Homo sapiens
7'027 cells x 32'383 genes h5ad
65.1 MB
 Not in ASAP Details
cellxgene
sc
A single-cell multi-omic atlas spanning the adult rhesus macaque brain (cell ... Publication DOI
6e2fbf86-9f5a-40f2-b549-47b51a57e762
Macaca mulatta
7'055 cells x 29'060 genes h5ad
27.6 MB
 Not in ASAP Details
cellxgene
sc
10X sc-RNA-seq, Day 8 iPSC-Derived Embryoid Bodies (Wellington et al. 2024) Publication DOI
bfd542a3-919c-4216-a314-322f2520d46c
Homo sapiens
7'056 cells x 35'477 genes h5ad
117 MB
 Not in ASAP Details
hca
sc
A cellular census of human lungs identifies novel cell states in health and i... Publication DOI
c0518445-3b3b-49c6-b8fc-c41daa4eacba::c8bd82fd-d261-4bb1-8ba6-bbc9d2049825
Homo sapiens
7'087 cells h5ad
169 MB
 Not in ASAP Details
cellxgene
sc
E8.5_rep1: 201104_13 Publication DOI
404b25e9-aa35-4435-ab6a-f29e30dd40d1
Mus musculus
7'088 cells x 27'368 genes h5ad
48.5 MB
 Not in ASAP Details
broad_scp
sc
Single nuc sequencing of anterior segment with focus on aqueous humor outflow...
SCP2317
Mus musculus
7'097 cells x 21'959 genes counts_table
109 MB
 Not in ASAP Details
cellxgene
sc
66 years old female - Fresh PBMCs (2 days post-intubation) Publication DOI
881fe679-c6e0-45a3-9427-c4e81be6921f
Homo sapiens
7'097 cells x 32'393 genes h5ad
67.7 MB
 Not in ASAP Details
hca
sc
SARS-CoV-2 infection of the oral cavity and saliva. Publication DOI
dcbb50d1-9acf-4f70-9fda-b1f63a948c49::30fab491-7993-4151-932a-b7ae901ca019
Homo sapiens
7'107 cells h5ad
29.1 MB
 Not in ASAP Details
matkp
sc
Single-nuclei transcriptome of human subcutaneous adipose tissue, 2022 Publication DOI
snRNA_StriederBarboza2022_Humans_SCP1903_SAT
Homo sapiens
7'132 cells zip
23.8 MB
 Not in ASAP Details
cellxgene
sc
E8.5_rep1: 201104_16 Publication DOI
45dad0c1-c0a6-421c-b9d2-2dccf05b3bf9
Mus musculus
7'138 cells x 27'368 genes h5ad
63.1 MB
 Not in ASAP Details
cellxgene
sc
Vascular_perivascular
ce5132bd-7600-4299-bb2c-2b00d409170f
Homo sapiens
7'155 cells x 32'397 genes h5ad
50.6 MB
 Not in ASAP Details
cellxgene
sc
L6CT - neocortex: Human variation study (HVS) Publication DOI
171b03c9-516b-499c-a434-fa4f70191988
Homo sapiens
7'156 cells x 18'736 genes h5ad
659 MB
 Not in ASAP Details
cellxgene
sc
In vitro differentiation of mouse Ccno-/- ependymal cells (DIV3), all cells Publication DOI
f9803f15-2de5-4c9a-b3f3-1dd020f0c1e3
Mus musculus
7'165 cells x 31'729 genes h5ad
140 MB
 Not in ASAP Details
cellxgene
sc
E8.5_rep1: 201104_17 Publication DOI
eb16bcf7-9c67-4ecf-989f-34d8ca71cb61
Mus musculus
7'176 cells x 27'368 genes h5ad
64.8 MB
 Not in ASAP Details
broad_scp
sc
Airway epithelium Publication DOI
SCP163
 7'193 cells x 27'716 genes counts_table
29.7 MB
 Not in ASAP Details
cellxgene
sc
E8.5_rep1: 201104_09 Publication DOI
550a45c4-b46e-47ec-90ac-db12fdaa2e4f
Mus musculus
7'233 cells x 27'368 genes h5ad
46 MB
 Not in ASAP Details
cellxgene
sc
Bladder Publication DOI
bdf0abdf-f1a5-4480-a30b-1e34eaee53bb
Microcebus murinus
7'244 cells x 16'400 genes h5ad
57.9 MB
 Details
cellxgene
sc
Brain non-myeloid cells - A single-cell transcriptomic atlas characterizes ag... Publication DOI
66ff82b4-9380-469c-bc4b-cfa08eacd325
Mus musculus
7'249 cells x 21'025 genes h5ad
161 MB
 Not in ASAP Details
broad_scp
sc
Transcriptomic landscape of the blastema niche in regenerating adult axolotl ... Publication DOI
SCP489
 7'270 cells x 96'017 genes counts_table
130 MB
 Not in ASAP Details
cellxgene
sc
Platelet sub_clusters of COVID-19 Immune Altas: Integration of 5 public COVID... Publication DOI
e763ed0d-0e5a-4b8e-9514-6da3d9e47956
Homo sapiens
7'274 cells x 23'337 genes h5ad
23.4 MB
 Not in ASAP Details
cellxgene
sc
Tabula Sapiens - Germline Publication DOI
b806712d-18b0-454c-a0fe-9909159e07c7
Homo sapiens
7'276 cells x 60'606 genes h5ad
363 MB
 Not in ASAP Details
ebi_sc
sc
Single cell transcriptional profile of third instar larval wing discs in Dros... Publication DOI
E-MTAB-9444
Drosophila melanogaster
7'278 cells h5ad
80 MB
 Not in ASAP Details
cellxgene
sc
Ovarian tissue from donor 4 Publication DOI
2a65bd41-4a3f-42f4-98b2-c53962811152
Homo sapiens
7'288 cells x 35'477 genes h5ad
84.9 MB
 Not in ASAP Details
ebi_sc
sc
Single cell transcriptional profiling of aortic endothelium identifies a hier...
E-MTAB-7149
Mus musculus
7'293 cells h5ad
110 MB
 Not in ASAP Details
cellxgene
sc
Liver - A single-cell transcriptomic atlas characterizes ageing tissues in th... Publication DOI
6202a243-b713-4e12-9ced-c387f8483dea
Mus musculus
7'294 cells x 17'943 genes h5ad
128 MB
 Not in ASAP Details
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