External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
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Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Molecular characterization of selectively vulnerable neurons in Alzheimer’s D... Publication DOI
f9ad5649-f372-43e1-a3a8-423383e5a8a2
Homo sapiens
8'168 cells x 31'997 genes h5ad
16.5 MB
 Not in ASAP Details
hca
sc
High-Resolution Transcriptomic Landscape of the Human Submandibular Gland. Publication DOI
ccc3b786-1da0-427f-a45f-76306d6143b6::4d17ab1b-de88-4cc1-878e-b9540c8ee21e
Homo sapiens
8'168 cells h5
18.3 MB
 Not in ASAP Details
cellxgene
sc
Pancreas Publication DOI
555bce6a-563b-4b9b-b496-3dbff30e756b
Microcebus murinus
8'172 cells x 16'400 genes h5ad
64.7 MB
 Details
cellxgene
sc
Non-neuronal cells of human eye Publication DOI
ab5b2256-b209-48b5-a801-c5d9a8c0de56
Homo sapiens
8'193 cells x 56'710 genes h5ad
82.3 MB
 Not in ASAP Details
cellxgene
sc
L6b - neocortex: Human variation study (HVS) Publication DOI
a30db232-08a6-48f0-ab9f-ad6977b8a6b1
Homo sapiens
8'213 cells x 18'736 genes h5ad
767 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA-seq of metabolite specific T-cells (MR1-restricted) from adul... Publication DOI
E-MTAB-7704
Mus musculus
8'223 cells h5ad
203 MB
 Not in ASAP Details
cellxgene
sc
Evolution of cellular diversity in primary motor cortex of mouse - excitory n... Publication DOI
6acb6637-ac08-4a65-b2d1-581e51dc7ccf
Mus musculus
8'242 cells x 30'146 genes h5ad
103 MB
 Not in ASAP Details
cellxgene
sc
Healthy - Salivary gland Publication DOI
8b47073c-8a20-4a37-b234-e1889b43991b
Homo sapiens
8'263 cells x 35'461 genes h5ad
96.4 MB
 Not in ASAP Details
broad_scp
sc
An immune-cell signature of bacterial sepsis (Bone Marrow Stimulation)
SCP550
 8'270 cells x 33'538 genes counts_table
51.6 MB
 Not in ASAP Details
broad_scp
sc
Induction of a regulatory myeloid program in bacterial sepsis and severe COVI...
SCP1322
Homo sapiens
8'279 cells x 33'538 genes counts_table
40.4 MB
 Not in ASAP Details
hca
sc
Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. Publication DOI
b91c623b-1945-4727-b167-0a93027b0d3f::20efcdd4-a9f5-4ec6-8f6e-83aaddc00ad7
Homo sapiens
8'281 cells h5
18.3 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA sequencing of chronic myelomonocytic leukemia stem cell Publication DOI
E-MTAB-8884
Homo sapiens
8'281 cells h5ad
290 MB
 Not in ASAP Details
cellxgene
sc
Large intestine - A single-cell transcriptomic atlas characterizes ageing tis... Publication DOI
2491629a-bde0-46ad-a073-e34fcb516857
Mus musculus
8'311 cells x 21'025 genes h5ad
254 MB
 Not in ASAP Details
cellxgene
sc
Fetal kidney dataset: stroma Publication DOI
c52de62a-058d-4d78-a464-bdf552378f43
Homo sapiens
8'345 cells x 32'088 genes h5ad
104 MB
 Not in ASAP Details
cellxgene
sc
Molecular characterization of selectively vulnerable neurons in Alzheimer’s D... Publication DOI
cd77258f-b08b-4c89-b93f-6e6f146b1a4d
Homo sapiens
8'362 cells x 31'997 genes h5ad
43.9 MB
 Not in ASAP Details
cellxgene
sc
Liver Publication DOI
5436f3d8-ca42-4ac7-9b4b-3c399a9bc496
Microcebus murinus
8'365 cells x 16'400 genes h5ad
46.1 MB
 Details
cellxgene
sc
Puck 'Puck_230223_01' Publication DOI
824da993-54e5-43b6-bb69-b5b0ca13cc02
Mus musculus
8'371 cells x 29'286 genes h5ad
24.3 MB
 Not in ASAP Details
hca
sc
Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. Publication DOI
b91c623b-1945-4727-b167-0a93027b0d3f::821e4a30-068d-4c02-89ab-7827d43eeb82
Homo sapiens
8'402 cells h5
20.4 MB
 Not in ASAP Details
cellxgene
sc
E8.5_rep1: 201104_12 Publication DOI
89528652-74fc-4a58-9aba-ca36b63d9f78
Mus musculus
8'425 cells x 27'368 genes h5ad
57.9 MB
 Not in ASAP Details
ebi_sc
sc
Multi-modal analysis of the aging mouse lung at cellular resolution Publication DOI
E-CURD-9
Mus musculus
8'429 cells h5ad
116 MB
 Not in ASAP Details
cellxgene
sc
Liver Publication DOI
a43aa46b-bd16-47fe-bc3e-19a052624e79
Homo sapiens
8'444 cells x 32'088 genes h5ad
62.4 MB
 Not in ASAP Details
cellxgene
sc
Immune
b89f6f68-c599-4850-a570-5f1992dbb5ad
Homo sapiens
8'461 cells x 32'397 genes h5ad
64.3 MB
 Not in ASAP Details
cellxgene
sc
organoid Publication DOI
8dc858b0-b076-4326-94bb-7c2d1cd721a3
Homo sapiens
8'556 cells x 32'375 genes h5ad
184 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Thalamus (THM) - Lateral nuclear complex (LNC) - ventral anterior... Publication DOI
ed11cc3e-2947-407c-883c-c53b043917c3
Homo sapiens
8'573 cells x 58'232 genes h5ad
106 MB
 Not in ASAP Details
cellxgene
sc
Heart - A single-cell transcriptomic atlas characterizes ageing tissues in th... Publication DOI
1fe63353-9e75-4824-aa30-ed8d84be748c
Mus musculus
8'613 cells x 17'943 genes h5ad
141 MB
 Not in ASAP Details
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