External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
thymus scRNA-seq atlas - smooth muscle cell subset Publication DOI
c3431f48-81bd-4d7b-9045-e43be7645883
Homo sapiens
10'019 cells x 35'477 genes h5ad
28.1 MB
 Not in ASAP Details
broad_scp
sc
Single cell RNA-seq of Cultured and Primary Mouse Calvarial Cells
SCP1337
Mus musculus
10'086 cells x 18'678 genes counts_table
819 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Hypothalamus (HTH) - mammillary region of HTH (HTHma) Publication DOI
00476f9f-ebc1-4b72-b541-32f912ce36ea
Homo sapiens
10'099 cells x 58'232 genes h5ad
130 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_230517_23' Publication DOI
813e021e-07cb-4c0b-a390-91a161ccfd58
Mus musculus
10'109 cells x 29'286 genes h5ad
29.7 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_240129_31' Publication DOI
b97484b9-1b7b-4255-8851-9e4edb22291e
Mus musculus
10'148 cells x 29'286 genes h5ad
24.6 MB
 Not in ASAP Details
ebi_sc
sc
Single cell analysis of emergent haematopoiesis in the human fetal bone marro... Publication DOI
E-MTAB-10042
Homo sapiens
10'151 cells h5ad
218 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA sequencing of zebrafish thyroid cells Publication DOI
E-GEOD-133466
Danio rerio
10'207 cells h5ad
210 MB
 Not in ASAP Details
cellxgene
sc
Air-Liquid Interface cultures of human airway epithelium in 4 differentiation... Publication DOI
c69fb6cd-fc4d-4216-85cb-8d80e7771786
Homo sapiens
10'224 cells x 35'552 genes h5ad
165 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191112_08 Publication DOI
78d59e4a-82eb-4a61-a1dc-da974d7ea54b
Mus musculus
10'250 cells x 18'551 genes h5ad
4.22 MB
 Not in ASAP Details
ebi_sc
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
E-HCAD-21
Mus musculus
10'263 cells h5ad
234 MB
 Not in ASAP Details
cellxgene
sc
HPC region Publication DOI
95d3b0fb-b8a7-4bec-a2e8-cded3222ff07
Homo sapiens
10'268 cells x 32'344 genes h5ad
79.4 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_230810_08' Publication DOI
54223ce6-6bd4-4b37-a5ad-6a38fb801190
Mus musculus
10'269 cells x 29'286 genes h5ad
25.8 MB
 Not in ASAP Details
hca
sc
Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19 Publication DOI
08fb10df-32e5-456c-9882-e33fcd49077a::91c30f46-99a9-447b-8256-899f484dcf8f
Homo sapiens
10'269 cells h5
20.2 MB
 Not in ASAP Details
hca
sc
Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. Publication DOI
b91c623b-1945-4727-b167-0a93027b0d3f::6f39d2b8-3843-4f14-8aed-516418b01da0
Homo sapiens
10'335 cells h5
24.5 MB
 Not in ASAP Details
cellxgene
sc
Myeloid cells from human cardiac tissue with myocarditis and healthy controls Publication DOI
a49167b8-fe43-4b8f-ac37-d9c2af16f116
Homo sapiens
10'363 cells x 32'397 genes h5ad
268 MB
 Not in ASAP Details
hca
sc
Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19 Publication DOI
08fb10df-32e5-456c-9882-e33fcd49077a::d2d0b982-af37-48a8-92bc-4e026a303821
Homo sapiens
10'366 cells h5
14.9 MB
 Not in ASAP Details
cellxgene
sc
Malignant cells for T-ALL patient P058 from original cohort. Publication DOI
1614cca1-2a40-48a6-a23c-c19f94b1d2c0
Homo sapiens
10'377 cells x 35'459 genes h5ad
223 MB
 Not in ASAP Details
cellxgene
sc
Mouse Germ Cells Publication DOI
5695d556-974e-4d92-9e99-5f61b8695313
Mus musculus
10'411 cells x 17'885 genes h5ad
181 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in the healthy human kidney: Puck_200205_17 Publication DOI
3bf0da2c-f0d7-4078-a152-d6a4f97ea43f
Homo sapiens
10'419 cells x 21'948 genes h5ad
15.7 MB
 Not in ASAP Details
cellxgene
sc
In vitro derived T cells, from Artificial Thymic Organoid protocol Publication DOI
8d73847b-33e7-48f0-837f-e3e6579bf12d
Homo sapiens
10'459 cells x 32'383 genes h5ad
120 MB
 Not in ASAP Details
hca
sc
Mapping the developing human immune system across organs Publication DOI
fcaa53cd-ba57-4bfe-af9c-eaa958f95c1a::a2bebd4b-9be2-49b0-a4e0-c3106cb7a6cd
Homo sapiens
10'459 cells h5ad
202 MB
 Not in ASAP Details
broad_scp
sc
Metabolic stress primes cancer by rebalancing cell and tissue functions: Huma...
SCP3357
Homo sapiens
10'522 cells x 16'323 genes rds
674 MB
 Not in ASAP Details
cellxgene
sc
Single nucleus transcriptomic profiling of human healthy hamstring tendon Publication DOI
06ef6b36-6c9b-4e10-8a94-d0baf274276e
Homo sapiens
10'533 cells x 22'909 genes h5ad
85.7 MB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the ionocytes Publication DOI
44bb7ba4-75aa-4530-84af-c2a02c7a0148
Danio rerio
10'536 cells x 32'031 genes h5ad
12.8 MB
 Not in ASAP Details
cellxgene
sc
Puck 'A0064_038' Publication DOI
7ce22352-318e-42d6-a881-3c1714fe8839
Mus musculus
10'549 cells x 29'286 genes h5ad
24.4 MB
 Not in ASAP Details
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