External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Puck 'Puck_240129_29' Publication DOI
a4e3aaf0-09cc-40c2-83bb-af87d9bed4a2
Mus musculus
10'553 cells x 29'286 genes h5ad
21.5 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_240108_07' Publication DOI
94d015c8-a8bc-4559-8ad4-5c41b29d287d
Mus musculus
10'567 cells x 29'286 genes h5ad
26.3 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_230517_37' Publication DOI
9288b3ca-c286-466e-a055-c5a2444053f7
Mus musculus
10'570 cells x 29'286 genes h5ad
22.4 MB
 Not in ASAP Details
ebi_sc
sc
Dissecting the human liver cellular landscape by single cell RNA-seq reveals ... Publication DOI
E-HCAD-9
Homo sapiens
10'594 cells h5ad
204 MB
 Not in ASAP Details
cellxgene
sc
HTAPP-878-SMP-7149 scRNA-seq Publication DOI
12c868c6-94df-48b5-acf2-b82f6aa14074
Homo sapiens
10'623 cells x 24'923 genes h5ad
110 MB
 Not in ASAP Details
hca
sc
Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. Publication DOI
b91c623b-1945-4727-b167-0a93027b0d3f::4f319635-9e53-4e89-88b9-228720fb415f
Homo sapiens
10'630 cells h5
19.8 MB
 Not in ASAP Details
broad_scp
sc
Whole CD45+ splenocytes from B6 mice, 10X (HMS)
SCP306
 10'651 cells x 28'692 genes counts_table
11.2 MB
 Not in ASAP Details
cellxgene
sc
Supercluster: Hippocampal CA4 Publication DOI
9ec335f2-420a-45a8-b45a-1ab646e50041
Homo sapiens
10'654 cells x 58'232 genes h5ad
184 MB
 Not in ASAP Details
broad_scp
sc
40dpf ovary GERM CELLS Publication DOI
SCP482
 10'658 cells x 21'049 genes counts_table
31.5 MB
 Not in ASAP Details
cellxgene
sc
Breast cancer 4 patients archival FFPE samples profiling with Chromium FLEX Publication DOI
fbdd8c17-b34a-4cbc-abc4-1aeaa294a538
Homo sapiens
10'689 cells x 18'063 genes h5ad
146 MB
 Not in ASAP Details
cellxgene
sc
VAL and DIS datasets: Non-Epithelial Publication DOI
6a270451-b4d9-43e0-aa89-e33aac1ac74b
Homo sapiens
10'696 cells x 28'998 genes h5ad
137 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in the healthy human kidney: Puck_200131_25 Publication DOI
3679ae7d-d70e-4c09-a8bb-78b8ae1006ff
Homo sapiens
10'701 cells x 22'850 genes h5ad
11.2 MB
 Not in ASAP Details
cellxgene
sc
Non-pregnant Uterus (Endometrium - Epithelial) Publication DOI
968885c5-b652-48d9-9006-c34b5fc1c07a
Homo sapiens
10'729 cells x 27'506 genes h5ad
200 MB
 Not in ASAP Details
cellxgene
sc
white matter - neurons Publication DOI
894573ad-498f-47ee-9bec-ad0880147eea
Homo sapiens
10'734 cells x 32'902 genes h5ad
110 MB
 Not in ASAP Details
cellxgene
sc
Single cell analysis of mouse and human prostate reveals novel fibroblasts wi... Publication DOI
5ba85070-a41c-4184-9c18-cf34c3fd0f62
Homo sapiens
10'742 cells x 26'791 genes h5ad
160 MB
 Not in ASAP Details
cellxgene
sc
Reintegrated transcriptomes of Delta pancreatic islet cells Publication DOI
7e9bde96-b4d1-43d3-a5fe-dde6c4a6dc47
Homo sapiens
10'770 cells x 26'936 genes h5ad
216 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Amygdaloid complex (AMY) - Corticomedial nuclear group (CMN) - an... Publication DOI
2a8ca8f3-5599-4cda-b973-3a2dfc3c1fe6
Homo sapiens
10'778 cells x 58'232 genes h5ad
169 MB
 Not in ASAP Details
ebi_sc
sc
High-throughput single-cell transcriptome profiling of plant cell types - sin... Publication DOI
E-CURD-4
Arabidopsis thaliana
10'779 cells h5ad
259 MB
 Not in ASAP Details
broad_scp
sc
Profiling the Drosophila Rbf mutant third instar larval eye disc Publication DOI
SCP275
 10'786 cells x 15'742 genes counts_table
36 MB
 Not in ASAP Details
cellxgene
sc
Fetal kidney dataset: nephron Publication DOI
08073b32-d389-41f4-a4fd-616de76915ab
Homo sapiens
10'790 cells x 32'088 genes h5ad
151 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_240129_37' Publication DOI
53f36737-ba16-4a3d-b26a-9d374fdaa7da
Mus musculus
10'794 cells x 29'286 genes h5ad
31 MB
 Not in ASAP Details
cellxgene
sc
e18.5 thalamic nuclei Publication DOI
f71f046d-ea2d-4470-ac38-572cbb06ee12
Mus musculus
10'811 cells x 30'198 genes h5ad
147 MB
 Not in ASAP Details
cellxgene
sc
Global Publication DOI
db83a61c-64d9-4266-bfcb-3d1469e42824
Mus musculus
10'831 cells x 19'178 genes h5ad
128 MB
 Not in ASAP Details
broad_scp
sc
HCA LungMAP COVID-19 Groningen Nawijn 2019 Vieira Braga
SCP873
 10'856 cells x 27 genes counts_table
142 KB
 Not in ASAP Details
ebi_sc
sc
Transcriptomic profile of human induced pluripotent stem cells at single cell... Publication DOI
E-MTAB-6524
Homo sapiens
10'879 cells h5ad
463 MB
 Not in ASAP Details
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