External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191112_05 Publication DOI
4eb29386-de81-452f-b3c0-e00844e8c7fd
Mus musculus
10'888 cells x 19'490 genes h5ad
4.19 MB
 Not in ASAP Details
cellxgene
sc
HTAPP-997-SMP-7789 Slide-seq Publication DOI
9237e573-980a-4be6-b028-0f01cc064956
Homo sapiens
10'892 cells x 16'908 genes h5ad
45.1 MB
 Not in ASAP Details
ebi_sc
sc
Single cell sequencing reveals phloem loading occurs via the abaxial bundle s... Publication DOI
E-GEOD-157757
Zea mays
10'901 cells h5ad
419 MB
 Not in ASAP Details
cellxgene
sc
HTAPP-880-SMP-7179 scRNA-seq Publication DOI
c7d0def0-2dcd-4111-902b-67e6baeac119
Homo sapiens
10'918 cells x 23'980 genes h5ad
105 MB
 Not in ASAP Details
cellxgene
sc
10X Visium spatial transcriptomics on tumor core tissue sections Publication DOI
318cb2a6-743a-4404-9515-413d5f64b9ff
Homo sapiens
10'924 cells x 35'469 genes h5ad
51 MB
 Not in ASAP Details
hca
sc
Mapping single-cell transcriptomes in the intra-tumoral and associated territ... Publication DOI
8f1f653d-3ea1-4d8e-b4a7-b97dc852c2b1::bcc79ae7-ed3b-467f-aa37-436577ec4d0a
Homo sapiens
10'924 cells h5ad
947 MB
 Not in ASAP Details
cellxgene
sc
Chandelier - MTG: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
8c6ed88f-11bf-4159-bad7-ff41fb1e1eca
Homo sapiens
10'928 cells x 35'483 genes h5ad
228 MB
 Not in ASAP Details
cellxgene
sc
Human Immune Health Atlas Other cells Publication DOI
81ffdcd6-3f04-40bc-8bb0-9748f4ffe576
Homo sapiens
10'937 cells x 32'357 genes h5ad
56.3 MB
 Not in ASAP Details
cellxgene
sc
SCBO-8 Publication DOI
7ee4b15b-b543-4a8f-a602-ab0344729caf
Homo sapiens
10'946 cells x 22'794 genes h5ad
219 MB
 Not in ASAP Details
hca
sc
Human distal lung maps and lineage hierarchies reveal a bipotent progenitor Publication DOI
e5fe8274-3769-4d7d-aa35-6d33c226ab43::48dec391-2b35-47d6-9c10-d9915d46acf3
Homo sapiens
10'949 cells h5
34.9 MB
 Not in ASAP Details
cellxgene
sc
HTAPP-812-SMP-8239 Slide-seq Publication DOI
f12ab0e6-383c-4362-b1c6-922de09ccbc9
Homo sapiens
10'957 cells x 15'507 genes h5ad
59.8 MB
 Not in ASAP Details
ebi_sc
sc
A single cell atlas of the human proximal epididymis reveals cell-type specif... Publication DOI
E-HCAD-38
Homo sapiens
10'959 cells h5ad
446 MB
 Not in ASAP Details
cellxgene
sc
Evolution of cellular diversity in primary motor cortex of human - inhibitory... Publication DOI
f7a068f1-0fdb-48e8-8029-db870ff11d9e
Homo sapiens
10'980 cells x 21'506 genes h5ad
110 MB
 Not in ASAP Details
cellxgene
sc
Human Germ Cells Publication DOI
290d50c7-7158-4198-acf5-6d4b624fd3dc
Homo sapiens
10'993 cells x 27'950 genes h5ad
188 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell transcriptomic analysis of rice root tips – Oryza sativa Japonica... Publication DOI
E-CURD-81
Oryza sativa Japonica Group
10'999 cells h5ad
357 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_200210_02 Publication DOI
60d25f3a-092a-4ea3-8e16-bd49c2846bbc
Mus musculus
11'005 cells x 20'615 genes h5ad
22 MB
 Not in ASAP Details
cellxgene
sc
Puck 'A0064_039' Publication DOI
4f3a25fa-a226-4c39-a41b-d2ff688c55d6
Mus musculus
11'028 cells x 29'286 genes h5ad
26.5 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_200131_13 Publication DOI
f37699b9-abcd-45e1-b8a9-fd406fe18c25
Mus musculus
11'031 cells x 21'067 genes h5ad
16.3 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell transcriptional analysis reveals ILC-like cells in zebrafish Publication DOI
E-MTAB-7159
Danio rerio
11'034 cells h5ad
130 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_240129_33' Publication DOI
7f556c49-713a-43ef-b9a7-04d77fbaae6b
Mus musculus
11'050 cells x 29'286 genes h5ad
29.2 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA-Seq of the murine non-myocyte cardiac cellulome Publication DOI
E-MTAB-6173
Mus musculus
11'057 cells h5ad
296 MB
 Not in ASAP Details
cellxgene
sc
HTAPP-917-SMP-4531 scRNA-seq Publication DOI
54d56674-e4e1-4e3c-9110-ea5cc2ac0eb5
Homo sapiens
11'074 cells x 19'353 genes h5ad
126 MB
 Not in ASAP Details
hca
sc
Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. Publication DOI
b91c623b-1945-4727-b167-0a93027b0d3f::632ed613-f32c-4d88-be46-701a897e5d20
Homo sapiens
11'074 cells h5
26.1 MB
 Not in ASAP Details
ebi_sc
sc
Single Cell Analysis of B cells in COVID-19 comprising active and recovered d... Publication DOI
E-MTAB-11011
Homo sapiens
11'084 cells h5ad
225 MB
 Not in ASAP Details
broad_scp
sc
liver Chromium single-cell RNA-seq Publication DOI
SCP2045
Mus musculus
11'085 cells x 19'355 genes rds
1.69 GB
 Not in ASAP Details
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