External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Sub UMAP of the cranial sensory ganglia Publication DOI
3e60412c-4707-49e6-9135-dce1fb837b20
Danio rerio
11'094 cells x 32'031 genes h5ad
14.4 MB
 Not in ASAP Details
cellxgene
sc
intestine_on_chip_media Publication DOI
f7ca7eb9-0919-4eba-99a1-21ba382b4174
Homo sapiens
11'103 cells x 32'357 genes h5ad
262 MB
 Not in ASAP Details
hca
sc
Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19 Publication DOI
08fb10df-32e5-456c-9882-e33fcd49077a::64175096-e33e-49da-868e-7f989a5a9e52
Homo sapiens
11'115 cells h5
21.1 MB
 Not in ASAP Details
cellxgene
sc
Macrophage cells from human healthy donor liver samples Publication DOI
b550fd94-97e0-42e2-90f7-7434781ea2f8
Homo sapiens
11'127 cells x 32'596 genes h5ad
89.3 MB
 Not in ASAP Details
cellxgene
sc
Spleen Publication DOI
bf694f39-4342-4e75-aec0-d46db17f2036
Microcebus murinus
11'152 cells x 16'400 genes h5ad
71.6 MB
 Details
broad_scp
sc
HCA LungMAP COVID-19 Adipose
SCP865
 11'167 cells x 27 genes counts_table
99.9 KB
 Not in ASAP Details
cellxgene
sc
intestine_on_chip_IFN Publication DOI
51d9716c-50bb-4fd8-8d1e-7d9329969cb7
Homo sapiens
11'177 cells x 32'357 genes h5ad
263 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_230517_33' Publication DOI
be110542-629f-4a0b-9ead-2b4d78b58a46
Mus musculus
11'193 cells x 29'286 genes h5ad
37.5 MB
 Not in ASAP Details
hca
sc
Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. Publication DOI
b91c623b-1945-4727-b167-0a93027b0d3f::b278f673-1489-4e6f-9ad4-b3e8ddb6a687
Homo sapiens
11'201 cells h5
29.1 MB
 Not in ASAP Details
cellxgene
sc
DLPFC region Publication DOI
07dd8c34-4625-480a-8ee4-273a06c3082b
Homo sapiens
11'202 cells x 32'344 genes h5ad
110 MB
 Not in ASAP Details
ebi_sc
sc
Drop-seq analysis of bleomycin-treated and control mouse lung single-cell sus... Publication DOI
E-MTAB-7142
Mus musculus
11'213 cells h5ad
203 MB
 Not in ASAP Details
cellxgene
sc
scRNA-seq data analysis of endothelium-enriched mesenteric arterial tissues f... Publication DOI
42b6a476-c51d-4f8b-b68b-44941b3a11bf
Homo sapiens
11'243 cells x 32'383 genes h5ad
116 MB
 Not in ASAP Details
cellxgene
sc
OPC - neocortex: Human variation study (HVS) Publication DOI
31285bcd-9a28-48ce-8cc0-543af80261d3
Homo sapiens
11'244 cells x 18'736 genes h5ad
873 MB
 Not in ASAP Details
ebi_sc
sc
Transcriptomic analysis of REPTOR or FoxO increased activity in muscle tissue... Publication DOI
E-GEOD-227038
Drosophila melanogaster
11'257 cells h5ad
106 MB
 Not in ASAP Details
cellxgene
sc
snRNA-seq of human subcutaneous adipose tissue - adipocytes SCT normalization Publication DOI
ff995299-bf56-4d11-914d-b77949f02fb1
Homo sapiens
11'265 cells x 35'477 genes h5ad
164 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Body of hippocampus (HiB) - Rostral CA1-2 Publication DOI
c4dd26a8-d956-4bee-a233-44b573f2ce27
Homo sapiens
11'265 cells x 58'232 genes h5ad
220 MB
 Not in ASAP Details
cellxgene
sc
snRNA-seq of human subcutaneous adipose tissue - adipocytes double filtration... Publication DOI
274968bf-96bf-4670-a85b-afe1cebb7c7d
Homo sapiens
11'272 cells x 35'477 genes h5ad
157 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_240108_27' Publication DOI
740da922-4b53-48f2-9713-bf874c14f12b
Mus musculus
11'298 cells x 29'286 genes h5ad
31.2 MB
 Not in ASAP Details
cellxgene
sc
Visium spatial - FFPE-SAN Publication DOI
d9ecdf7b-e5f9-459e-a7da-e918748cfdfe
Homo sapiens
11'312 cells x 17'902 genes h5ad
171 MB
 Not in ASAP Details
cellxgene
sc
Tabula Sapiens - Kidney Publication DOI
2423ce2c-3149-4cca-a2ff-cf682ea29b5f
Homo sapiens
11'376 cells x 60'606 genes h5ad
429 MB
 Not in ASAP Details
cellxgene
sc
Retinal ganglion cells of the human fovea and peripheral retina Publication DOI
d319af7f-be2e-441e-8caa-3b8a88480e89
Homo sapiens
11'404 cells x 32'040 genes h5ad
288 MB
 Not in ASAP Details
broad_scp
sc
Single cell RNA-seq on the Drosophila WT third instar larval eye disc Publication DOI
SCP269
 11'416 cells x 16'331 genes counts_table
37.4 MB
 Not in ASAP Details
cellxgene
sc
HTAPP-853-SMP-4381 Slide-seq Publication DOI
71e44b30-83b6-455c-a161-bc04c9898f00
Homo sapiens
11'430 cells x 15'939 genes h5ad
46.8 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_230810_02' Publication DOI
3e577301-52d1-4db9-89d7-96871ad3950b
Mus musculus
11'433 cells x 29'286 genes h5ad
24.2 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in the healthy human kidney: Puck_200113_07 Publication DOI
90ef2377-e4d0-41c7-924f-6f9ee7a9237d
Homo sapiens
11'456 cells x 22'676 genes h5ad
9.25 MB
 Not in ASAP Details
of 674