External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
snRNA-seq of human visceral adipose tissue - adipocytes Publication DOI
325044a1-4766-4104-8da9-abdfd1397e74
Homo sapiens
15'460 cells x 35'477 genes h5ad
168 MB
 Not in ASAP Details
cellxgene
sc
CD45 negative cells from human liver dataset Publication DOI
d1cbed97-d88f-4954-8925-13302fe30b39
Homo sapiens
15'481 cells x 30'172 genes h5ad
185 MB
 Not in ASAP Details
cellxgene
sc
blood and bone marrow from a healthy young donor Publication DOI
d3566d6a-a455-4a15-980f-45eb29114cab
Homo sapiens
15'502 cells x 460 genes h5ad
10.3 MB
 Not in ASAP Details
cellxgene
sc
T/NK cells - Bronchoalveolar lavage from paediatric cystic fibrosis (CF) and ... Publication DOI
6ba45a2b-0a29-454f-a580-41b0e540c06b
Homo sapiens
15'511 cells x 20'794 genes h5ad
76.5 MB
 Not in ASAP Details
cellxgene
sc
E9.5: 201104_31 Publication DOI
0e1e3573-d3b7-43f1-84a3-03067f1137aa
Mus musculus
15'516 cells x 27'368 genes h5ad
96.3 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA sequencing of developing maize ears facilitates functional an... Publication DOI
E-ENAD-51
Zea mays
15'516 cells h5ad
404 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_240129_26' Publication DOI
309b990b-9834-44ba-a4a2-a4dbbff8480c
Mus musculus
15'583 cells x 29'286 genes h5ad
27.3 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191109_10 Publication DOI
ce19be17-f066-452f-922e-b1f232ce8af5
Mus musculus
15'592 cells x 19'261 genes h5ad
6.96 MB
 Not in ASAP Details
cellxgene
sc
Microglia - 24 months old wild-type and Rag1-KO Publication DOI
a539c7af-fb65-44b1-8812-000b097eac99
Mus musculus
15'601 cells x 20'870 genes h5ad
167 MB
 Not in ASAP Details
cellxgene
sc
SACC region Publication DOI
a24ce10f-5a87-4e1f-a34a-f4fe5fc84052
Homo sapiens
15'669 cells x 32'344 genes h5ad
176 MB
 Not in ASAP Details
cellxgene
sc
High-Resolution Transcriptomic Landscape of the Human Submandibular Gland Publication DOI
4a90bbba-df97-4a28-83ae-7386fe7d9167
Homo sapiens
15'684 cells x 20'170 genes h5ad
79.9 MB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the endoderm Publication DOI
ab350c6a-41b6-4ba4-b9ff-20e39d7885a1
Danio rerio
15'703 cells x 32'031 genes h5ad
19.4 MB
 Not in ASAP Details
hca
sc
Human distal lung maps and lineage hierarchies reveal a bipotent progenitor Publication DOI
e5fe8274-3769-4d7d-aa35-6d33c226ab43::c768ec3e-89fc-44cb-8105-4602cb017947
Homo sapiens
15'713 cells h5
70.3 MB
 Not in ASAP Details
ebi_sc
sc
A single-cell survey of the human first-trimester placenta and decidua (10x) Publication DOI
E-HCAD-24
Homo sapiens
15'731 cells h5ad
474 MB
 Not in ASAP Details
cellxgene
sc
CGE-derived interneurons integrated with 10X sequencing MOp data Publication DOI
9bb9596d-f23f-4558-912f-d4dc7d52721b
Mus musculus
15'755 cells x 26'944 genes h5ad
132 MB
 Not in ASAP Details
cellxgene
sc
Molecular characterization of selectively vulnerable neurons in Alzheimer’s D... Publication DOI
24066994-8183-488d-b037-ef6bb524af39
Homo sapiens
15'772 cells x 31'997 genes h5ad
34.5 MB
 Not in ASAP Details
cellxgene
sc
Transcriptomic Analysis of Air-Liquid Interface Culture in Human Lung Organoi... Publication DOI
ef1a4b05-540c-4f73-8ceb-49dfa800645d
Homo sapiens
15'806 cells x 25'229 genes h5ad
608 MB
 Not in ASAP Details
cellxgene
sc
Molecular characterization of selectively vulnerable neurons in Alzheimer’s D... Publication DOI
873ff933-4fda-4936-9a70-67df11af90ac
Homo sapiens
15'833 cells x 31'997 genes h5ad
102 MB
 Not in ASAP Details
broad_scp
sc
Induction of a regulatory myeloid program in bacterial sepsis and severe COVI...
SCP1323
Homo sapiens
15'880 cells x 33'538 genes counts_table
71.3 MB
 Not in ASAP Details
cellxgene
sc
Bone Publication DOI
f760224a-fb9a-4dd2-9339-b72ee01e5825
Microcebus murinus
15'891 cells x 16'400 genes h5ad
137 MB
 Details
cellxgene
sc
Puck 'Puck_230517_39' Publication DOI
1c9ae8e1-2a57-4b5f-8a7b-3458b1a1005c
Mus musculus
15'907 cells x 29'286 genes h5ad
42 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA-Seq profiling of human embryonic kidney outer and inner corti... Publication DOI
E-GEOD-124472
Homo sapiens
15'922 cells h5ad
522 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNAseq of control chimeric mouse embryos at embryonic days 7.5 an... Publication DOI
E-MTAB-7324
Mus musculus
15'927 cells h5ad
880 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_200104_03 Publication DOI
10eed666-34e0-4b98-9384-179993873aa8
Mus musculus
16'027 cells x 19'194 genes h5ad
10.5 MB
 Not in ASAP Details
cellxgene
sc
All cells Publication DOI
78a1eb39-de7d-43ee-b860-50d253a4e8c6
Mus musculus
16'042 cells x 30'149 genes h5ad
231 MB
 Not in ASAP Details
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