External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
ebi_sc
sc
Single cell RNA sequencing of intestinal NKp46+ innate lymphoid cells (ILCs) ... Publication DOI
E-MTAB-11238
Mus musculus
16'073 cells h5ad
474 MB
 Not in ASAP Details
ebi_sc
sc
Effects of Post-Myocardial Infarction Heart Failure on the Bone Vascular Nich... Publication DOI
E-MTAB-10448
Mus musculus
16'085 cells h5ad
574 MB
 Not in ASAP Details
cellxgene
sc
Blood endothelial cells from integrated dataset of 20 donors Publication DOI
c35a95de-e54c-46c0-855f-984f21163279
Homo sapiens
16'119 cells x 36'166 genes h5ad
250 MB
 Not in ASAP Details
cellxgene
sc
L6b - MTG: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
8a8aedcb-5bb3-453d-a9f0-f37951ae1515
Homo sapiens
16'227 cells x 35'483 genes h5ad
574 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in the healthy human kidney: Puck_200104_23 Publication DOI
55158af8-7de6-48d5-8aa3-0088ebd7cd4a
Homo sapiens
16'234 cells x 24'648 genes h5ad
17.3 MB
 Not in ASAP Details
cellxgene
sc
Olah et al (2020) Single-cell Human Microglia Publication DOI
a1b9c51e-a408-4f7f-bccb-abefe20ae2a5
Homo sapiens
16'245 cells x 31'983 genes h5ad
90.7 MB
 Not in ASAP Details
broad_scp
sc
Leptin receptor neurons in the dorsomedial hypothalamus input to the circadia...
SCP2369
Mus musculus
16'281 cells x 25'981 genes rds
3.4 GB
 Not in ASAP Details
broad_scp
sc
Bronchiolitis Obliterans Syndrome - LungMAP
SCP1157
 16'305 cells x 35'349 genes h5ad
344 MB
 Not in ASAP Details
broad_scp
sc
HCA LungMAP COVID-19 Fibrotic Lung (Xavier)
SCP892
 16'306 cells x 26 genes counts_table
150 KB
 Not in ASAP Details
cellxgene
sc
Astro - neocortex: Human variation study (HVS) Publication DOI
ea95cdd5-cf7e-4d5d-a0bd-032776d32ae5
Homo sapiens
16'319 cells x 18'736 genes h5ad
1.29 GB
 Not in ASAP Details
cellxgene
sc
Submucosa Epcam-CD235ab-CD45-CD31- Publication DOI
d51dc6f3-de9d-4695-8ad9-ffcf94876e0f
Homo sapiens
16'338 cells x 32'088 genes h5ad
170 MB
 Not in ASAP Details
cellxgene
sc
In vitro differentiation of mouse ependymal cells (DIV3), all cells Publication DOI
612491cb-8ba7-492d-b9be-fc645ecf46a7
Mus musculus
16'401 cells x 31'729 genes h5ad
332 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA sequencing of myeloid cells from the aortas of ApoE-/- mice f... Publication DOI
E-MTAB-10743
Mus musculus
16'403 cells h5ad
355 MB
 Not in ASAP Details
cellxgene
sc
SCLC immune cells Publication DOI
76347874-8801-44bf-9aea-0da21c78c430
Homo sapiens
16'475 cells x 24'540 genes h5ad
654 MB
 Not in ASAP Details
cellxgene
sc
Bipolar cells of human eye Publication DOI
4e38f019-f8e8-44ae-ad32-ba500de6f64c
Homo sapiens
16'540 cells x 56'710 genes h5ad
147 MB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the pigment Publication DOI
82c9a9e2-36ea-459b-9c56-c104ccda7251
Danio rerio
16'596 cells x 32'031 genes h5ad
20 MB
 Not in ASAP Details
cellxgene
sc
Supercluster: Mammillary body Publication DOI
599504e5-d4ad-45bd-9128-823faf0fb9c9
Homo sapiens
16'602 cells x 58'232 genes h5ad
272 MB
 Not in ASAP Details
cellxgene
sc
Natural killer T cells from human healthy donor liver samples Publication DOI
43560d7c-acd6-4ede-830d-c9ffc6cd0862
Homo sapiens
16'665 cells x 32'596 genes h5ad
122 MB
 Not in ASAP Details
cellxgene
sc
L6IT - neocortex: Human variation study (HVS) Publication DOI
1a974af7-8b4b-4abb-8aba-23e2979d9518
Homo sapiens
16'668 cells x 18'736 genes h5ad
1.52 GB
 Not in ASAP Details
ebi_sc
sc
The extracellular function of LGALS3BP in neural progenitors during brain dev... Publication DOI
E-MTAB-10485
Homo sapiens
16'694 cells h5ad
711 MB
 Not in ASAP Details
cellxgene
sc
Fetal Bone Marrow (10x) - Down Syndrome Publication DOI
86282760-5099-4c71-8cdd-412dcbbbd0b9
Homo sapiens
16'743 cells x 32'088 genes h5ad
218 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Hypothalamus (HTH) - supraoptic region of HTH - HTHso (anterior h... Publication DOI
35c8a04c-8639-4d15-8228-765d8d93fc96
Homo sapiens
16'753 cells x 58'232 genes h5ad
184 MB
 Not in ASAP Details
cellxgene
sc
E9.5: 201112_03 Publication DOI
179f3dd0-b3b5-4e98-9163-9c628896bb28
Mus musculus
16'761 cells x 27'368 genes h5ad
91.3 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell immune repertoire sequencing of bone marrow plasma cells followin... Publication DOI
E-CURD-118
Mus musculus
16'779 cells h5ad
438 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191223_13 Publication DOI
1c224f30-a9c4-48c6-951d-8d86c0a2886e
Mus musculus
16'787 cells x 18'183 genes h5ad
6.7 MB
 Not in ASAP Details
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