External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
ebi_sc
sc
Single cell RNA-seq from 10X for a living biobank of ovarian cancer ex vivo m... Publication DOI
E-MTAB-8559
Homo sapiens
19'880 cells h5ad
766 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_200127_08 Publication DOI
4f420bc4-b9cd-4e14-a1d2-51d76f776374
Mus musculus
19'886 cells x 20'170 genes h5ad
17.8 MB
 Not in ASAP Details
cellxgene
sc
Single cell transcriptional and chromatin accessibility profiling redefine ce... Publication DOI
9df60c57-fdf3-4e93-828e-fe9303f20438
Homo sapiens
19'985 cells x 32'383 genes h5ad
154 MB
 Not in ASAP Details
cellxgene
sc
B Cell/Plasmablast Sub_clusters of COVID-19 Immune Altas: Integration of 5 pu... Publication DOI
d9b4bc69-ed90-4f5f-99b2-61b0681ba436
Homo sapiens
20'000 cells x 23'337 genes h5ad
147 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA-sequencing of human fetal kidneys Publication DOI
E-GEOD-114530
Homo sapiens
20'000 cells h5ad
555 MB
 Not in ASAP Details
ebi_sc
sc
Transcriptional disorganization of fibroblasts is a hallmark of the aging heart Publication DOI
E-MTAB-7869
Mus musculus
20'002 cells h5ad
398 MB
 Not in ASAP Details
cellxgene
sc
Renal cell carcinoma, pre aPD1, kidney Puck_200727_13 Publication DOI
f339fe89-c99c-4f50-b76d-2ffe9d376500
Homo sapiens
20'021 cells x 23'515 genes h5ad
17 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Hypothalamus (HTH) - preoptic region of HTH - HTHpo (medial preop... Publication DOI
03d38670-1444-4001-bc53-9936e61d9b20
Homo sapiens
20'027 cells x 58'232 genes h5ad
159 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191223_01 Publication DOI
4dbc3399-8272-43c4-b6fd-9d7c983e62bb
Mus musculus
20'055 cells x 19'187 genes h5ad
15.3 MB
 Not in ASAP Details
cellxgene
sc
Retina Publication DOI
856c1b98-5727-49da-bf0f-151bdb8cb056
Homo sapiens
20'091 cells x 19'263 genes h5ad
52.1 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Thalamus (THM) - Subthalamic nucleus and nearby - STH Publication DOI
a5b5d1f3-dd8b-44f6-a685-15f0f741c062
Homo sapiens
20'162 cells x 58'232 genes h5ad
74.4 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in the healthy human kidney: Puck_200115_15 Publication DOI
51e353b3-c8fe-4e8c-b912-e75c9bc28a66
Homo sapiens
20'245 cells x 26'697 genes h5ad
31.1 MB
 Not in ASAP Details
ebi_sc
sc
Single-nucleus RNA-seq resolves spatiotemporal developmental trajectories in ... Publication DOI
E-ENAD-53
Solanum lycopersicum
20'278 cells h5ad
374 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_200127_01 Publication DOI
df4c4fdc-756a-4147-a6a0-9c101f62eced
Mus musculus
20'320 cells x 19'303 genes h5ad
15.8 MB
 Not in ASAP Details
cellxgene
sc
Immune Cells Publication DOI
32e8a3d7-7b15-4f80-a0ff-6d2fc531e972
Homo sapiens
20'321 cells x 32'375 genes h5ad
133 MB
 Not in ASAP Details
cellxgene
sc
B cells -- CV19 infection, vaccination and HC Publication DOI
1a7e99fe-d5b6-44d7-aa50-c6ef6ab29761
Homo sapiens
20'407 cells x 32'344 genes h5ad
106 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_200210_04 Publication DOI
9246671b-f814-4252-8f1a-57f4f5e28f81
Mus musculus
20'424 cells x 19'631 genes h5ad
11.4 MB
 Not in ASAP Details
cellxgene
sc
Interneuron maturation in the human entorhinal cortex Publication DOI
72822932-10f6-466f-baf3-a2c1d89364bc
Homo sapiens
20'470 cells x 21'459 genes h5ad
357 MB
 Not in ASAP Details
cellxgene
sc
Late tip organoid Publication DOI
43a1506b-aa9e-46a3-b288-d210f4595ddf
Homo sapiens
20'475 cells x 19'865 genes h5ad
269 MB
 Not in ASAP Details
ebi_sc
sc
The human gastrointestinal tract through space and time - Adult GEX Publication DOI
E-MTAB-9543
Homo sapiens
20'484 cells h5ad
224 MB
 Not in ASAP Details
ebi_sc
sc
Trajectory Mapping of the Early Drosophila Germline Reveals Controls of Zygot... Publication DOI
E-GEOD-150568
Drosophila melanogaster
20'507 cells h5ad
681 MB
 Not in ASAP Details
cellxgene
sc
ccRCC - Single-cell analyses of renal cell cancers reveal insights into tumor... Publication DOI
be39785b-67cb-4177-be19-a40ee3747e45
Homo sapiens
20'509 cells x 32'088 genes h5ad
221 MB
 Not in ASAP Details
cellxgene
sc
Fibroblasts Publication DOI
e871881f-b42d-4500-906d-0972a14ba47d
Homo sapiens
20'515 cells x 32'383 genes h5ad
229 MB
 Not in ASAP Details
cellxgene
sc
Human Immune Cell Lineage Publication DOI
ac2fea99-ce08-4fca-8d03-a19f37bf21a3
Homo sapiens
20'556 cells x 28'171 genes h5ad
2.2 GB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191112_02 Publication DOI
34893c3b-1776-4a4c-9ea0-9f86ad168ae4
Mus musculus
20'568 cells x 21'123 genes h5ad
13.3 MB
 Not in ASAP Details
of 674