External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
NAC region Publication DOI
d7cff847-6403-44a6-ad8a-2f5a783639dd
Homo sapiens
20'571 cells x 32'344 genes h5ad
230 MB
 Not in ASAP Details
broad_scp
sc
Mouse Bone Marrow Stroma in Homeostasis
SCP361
 20'581 cells x 27'998 genes counts_table
302 MB
 Not in ASAP Details
cellxgene
sc
snRNA-seq of human retina - retinal ganglion cell subset - excluding midget c... Publication DOI
e404d417-56e4-40a5-b3c6-69e9f92d8cbd
Homo sapiens
20'587 cells x 35'475 genes h5ad
460 MB
 Not in ASAP Details
cellxgene
sc
Fibroblasts and Schwann cells Publication DOI
1851b6ab-2386-40a1-8c2a-b7cd895b889e
Homo sapiens
20'611 cells x 32'375 genes h5ad
185 MB
 Not in ASAP Details
cellxgene
sc
Unciliated epithelial cells from integrated dataset of 20 donors Publication DOI
19cca385-55f4-45dd-8e62-d9e15f59e32c
Homo sapiens
20'645 cells x 36'166 genes h5ad
427 MB
 Not in ASAP Details
cellxgene
sc
Single-cell reconstruction of follicular remodeling in the human adult ovary Publication DOI
1f1c5c14-5949-4c81-b28e-b272e271b672
Homo sapiens
20'676 cells x 32'088 genes h5ad
99.1 MB
 Not in ASAP Details
cellxgene
sc
Tongue - A single-cell transcriptomic atlas characterizes ageing tissues in t... Publication DOI
98ad5247-68f8-42f8-b8e5-7938cb373a91
Mus musculus
20'680 cells x 17'943 genes h5ad
442 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191223_22 Publication DOI
d18c575e-c435-43f5-b99b-b6936341c83d
Mus musculus
20'689 cells x 21'520 genes h5ad
22.2 MB
 Not in ASAP Details
cellxgene
sc
L5/6 NP - MTG: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
75e6eee5-d0e3-4291-9360-f288ffe6c7c4
Homo sapiens
20'741 cells x 35'483 genes h5ad
572 MB
 Not in ASAP Details
cellxgene
sc
thymus scRNA-seq atlas - fibroblast subset Publication DOI
93a3b257-359b-4266-b23f-64875d37a9e3
Homo sapiens
20'779 cells x 35'477 genes h5ad
71 MB
 Not in ASAP Details
cellxgene
sc
Vascular endothelial cells Publication DOI
4ebcbeeb-2208-4d30-acb2-8142a5201814
Homo sapiens
20'855 cells x 32'383 genes h5ad
183 MB
 Not in ASAP Details
hca
sc
Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19 Publication DOI
08fb10df-32e5-456c-9882-e33fcd49077a::1e11213b-0e28-4a11-bd79-f50b55600170
Homo sapiens
20'857 cells h5
51.2 MB
 Not in ASAP Details
cellxgene
sc
Single-cell atlas of 24 hormone therapy naive localised prostate cancers -- E... Publication DOI
b347446f-2e38-4248-96fb-39acc50f2112
Homo sapiens
20'858 cells x 32'397 genes h5ad
273 MB
 Not in ASAP Details
ebi_sc
sc
Single-Cell RNA Sequencing of Retinal Organoids Derived by CSC14 hESCs Publication DOI
E-MTAB-11121
Homo sapiens
20'861 cells h5ad
1.2 GB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in the healthy human kidney: Puck_200115_03 Publication DOI
2d4998cf-bd56-4e59-b57d-a04682a36ab1
Homo sapiens
20'866 cells x 26'099 genes h5ad
33.5 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in the healthy human kidney: Puck_200115_09 Publication DOI
c2dec445-4116-4b6d-9253-a73f9516460f
Homo sapiens
20'868 cells x 26'003 genes h5ad
41.6 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191204_03 Publication DOI
7c625d8b-f2e3-4b27-8a8f-1d61e58ceae7
Mus musculus
20'886 cells x 21'342 genes h5ad
18.9 MB
 Not in ASAP Details
cellxgene
sc
HTAPP-514-SMP-6760 scRNA-seq Publication DOI
39f6fec9-2539-4b99-982b-f12888ef649a
Homo sapiens
20'916 cells x 26'100 genes h5ad
156 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Thalamus (THM) - medial nuclear complex of thalamus (MNC) - medio... Publication DOI
5a73f63f-18a2-49b5-b431-2c469c41a41b
Homo sapiens
20'916 cells x 58'232 genes h5ad
298 MB
 Not in ASAP Details
broad_scp
sc
A molecular census of arcuate hypothalamus and median eminence cell types Publication DOI
SCP97
 20'921 cells x 19'743 genes counts_table
371 MB
 Not in ASAP Details
hca
sc
A single cell immune cell atlas of human hematopoietic system
cc95ff89-2e68-4a08-a234-480eca21ce79::4d47a49b-ee0e-4fb9-8064-185dc4d4de48
Homo sapiens
20'989 cells h5ad
351 MB
 Not in ASAP Details
cellxgene
sc
Cutaneous melanoma, lymph node metastasis Puck_220215_11 Publication DOI
50c4a6d6-940b-4c6a-a376-aea2ae2d3168
Homo sapiens
21'003 cells x 27'933 genes h5ad
19.9 MB
 Not in ASAP Details
broad_scp
sc
HCA LungMAP COVID-19 Placenta (Yuk Ming Dennis Lo)
SCP851
 21'011 cells x 22 genes counts_table
2.15 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell transcriptomics of the human retinal pigment epithelium and choro... Publication DOI
E-GEOD-135922
Homo sapiens
21'022 cells h5ad
737 MB
 Not in ASAP Details
cellxgene
sc
progressive_plasticity_during_crc_metastasis_non-tumor_epithelial Publication DOI
5ee552f5-834c-4766-92c8-5a09dfd45767
Homo sapiens
21'026 cells x 25'344 genes h5ad
295 MB
 Not in ASAP Details
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