External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
MSK SPECTRUM - Dendritic cells Publication DOI
97d9238c-1a39-4873-b0bb-963ec2d788e6
Homo sapiens
24'025 cells x 31'093 genes h5ad
183 MB
 Not in ASAP Details
cellxgene
sc
Visium spatial - AVN Publication DOI
f29ca8ac-f8c9-469c-a039-3494545d711a
Homo sapiens
24'026 cells x 32'383 genes h5ad
185 MB
 Not in ASAP Details
broad_scp
sc
Intertumoral lineage diversity and immunosuppressive transcriptional programs... Publication DOI
SCP2393
Homo sapiens
24'048 cells x 33'538 genes counts_table
274 MB
 Not in ASAP Details
cellxgene
sc
Spatiotemporal analysis of human intestinal development at single-cell resolu... Publication DOI
4d2e0563-cf4a-48bd-aa7f-efc26025b53a
Homo sapiens
24'081 cells x 32'330 genes h5ad
223 MB
 Not in ASAP Details
cellxgene
sc
adult human skin cells of health and psoriasis vulgaris Publication DOI
b796f27e-e191-4f2d-b40c-e6ac58163b4e
Homo sapiens
24'126 cells x 28'082 genes h5ad
167 MB
 Not in ASAP Details
broad_scp
sc
Single cell RNA-seq of adult and pediatric glioblastoma Publication DOI
SCP393
 24'131 cells x 39'845 genes counts_table
296 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Pons (Pn) - Pontine reticular formation (PnRF) - parabrachial nuc... Publication DOI
f3565fda-499a-4d20-bd92-563c09954c42
Homo sapiens
24'155 cells x 58'232 genes h5ad
225 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Spinal cord - SpC Publication DOI
090da8ea-46e8-40df-bffc-1f78e1538d27
Homo sapiens
24'190 cells x 58'232 genes h5ad
147 MB
 Not in ASAP Details
cellxgene
sc
Stromal cell diversity associated with immune evasion in human triple‐negativ... Publication DOI
68b6114f-e990-4033-bfb3-c35536633aaa
Homo sapiens
24'271 cells x 27'040 genes h5ad
189 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Epithalamus - ETH Publication DOI
93131426-0124-4ab4-a013-9dfbcd99d467
Homo sapiens
24'327 cells x 58'232 genes h5ad
306 MB
 Not in ASAP Details
cellxgene
sc
Oligodendrocytes Publication DOI
15e0ec3e-a05f-4cd8-8624-96448f5a2b58
Homo sapiens
24'342 cells x 60'305 genes h5ad
237 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Thalamus (THM) - intralaminar nuclear complex (ILN) - posterior g... Publication DOI
367b55f4-d543-49aa-90e8-4765fcb8c687
Homo sapiens
24'354 cells x 58'232 genes h5ad
341 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191109_07 Publication DOI
ba79b444-a9e4-4323-8474-421dcfb0d905
Mus musculus
24'438 cells x 20'398 genes h5ad
13.8 MB
 Not in ASAP Details
cellxgene
sc
A single-cell and spatially-resolved atlas of human breast cancers - Cancer_e... Publication DOI
7357bdd2-e05b-4e87-acd9-e3a26382648b
Homo sapiens
24'489 cells x 28'468 genes h5ad
308 MB
 Not in ASAP Details
cellxgene
sc
Lung - A single-cell transcriptomic atlas characterizes ageing tissues in the... Publication DOI
0fb7916e-7a68-4a4c-a441-3ab3989f29a7
Mus musculus
24'540 cells x 17'943 genes h5ad
288 MB
 Not in ASAP Details
cellxgene
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra -... Publication DOI
e2a3c32d-71e2-4f38-b19c-dfcb8729cf46
Homo sapiens
24'544 cells x 22'489 genes h5ad
183 MB
 Not in ASAP Details
cellxgene
sc
Longitudinal single-nucleus RNA-seq atlas of myeloid cells in pediatric high-... Publication DOI
4fa18826-7415-4f0b-92fd-31fb2b60838d
Homo sapiens
24'551 cells x 19'089 genes h5ad
222 MB
 Not in ASAP Details
ebi_sc
sc
Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system sug... Publication DOI
E-GEOD-148360
Mus musculus
24'609 cells h5ad
448 MB
 Not in ASAP Details
cellxgene
sc
E9.5: 201112_04 Publication DOI
327288b9-4e10-40ee-950a-ad18b434930e
Mus musculus
24'634 cells x 27'368 genes h5ad
146 MB
 Not in ASAP Details
ebi_sc
sc
Age-related changes in polycomb gene regulation disrupt lineage fidelity in i... Publication DOI
E-GEOD-157775
Drosophila melanogaster
24'665 cells h5ad
516 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in the healthy human kidney: Puck_200115_18 Publication DOI
6d62fc4d-052e-4bb4-92ed-55785502a02c
Homo sapiens
24'675 cells x 26'180 genes h5ad
28.3 MB
 Not in ASAP Details
cellxgene
sc
Sncg - DLPFC: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
b1d37bbd-9ae4-4404-b2f9-f2fe66750e4e
Homo sapiens
24'792 cells x 35'483 genes h5ad
725 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebral cortex (Cx) - Rostral gyrus (RoG) - Dorsal division of M... Publication DOI
4d43082e-59cd-43ac-b77d-54d55519c881
Homo sapiens
24'808 cells x 58'232 genes h5ad
282 MB
 Not in ASAP Details
cellxgene
sc
Differentiation dynamics of mammary epithelial cells revealed by single-cell ... Publication DOI
12445b6d-4657-47d7-af4f-06f5a6bc6887
Mus musculus
25'010 cells x 27'064 genes h5ad
270 MB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the mesenchyme Publication DOI
79b58634-4c26-48bc-8c6e-9166bad1f6ef
Danio rerio
25'067 cells x 32'031 genes h5ad
23.7 MB
 Not in ASAP Details
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