External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
ebi_sc
sc
A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI
E-HCAD-25
Homo sapiens
27'550 cells h5ad
1.2 GB
 Not in ASAP Details
cellxgene
sc
Human Stem Cells (LIV and TH) - A cell atlas of human thymic development defi... Publication DOI
814f2c97-49e4-4a17-be26-fde3c4c57d1b
Homo sapiens
27'589 cells x 32'088 genes h5ad
445 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191204_05 Publication DOI
2214c7a9-371f-4520-a2d0-88524b80b577
Mus musculus
27'639 cells x 21'394 genes h5ad
21.3 MB
 Not in ASAP Details
cellxgene
sc
snRNA-seq of human adipose tissue - adipocytes from subcutaneous and visceral... Publication DOI
11622d58-4dfe-4a81-b3d2-c4cabbfd636a
Homo sapiens
27'665 cells x 35'477 genes h5ad
328 MB
 Not in ASAP Details
cellxgene
sc
Living donor kidney Publication DOI
0bae7ebf-eb54-46a6-be9a-3461cecefa4c
Homo sapiens
27'675 cells x 26'791 genes h5ad
453 MB
 Not in ASAP Details
hca
sc
Spatial transcriptomics of healthy and fibrotic human liver at single-cell re... Publication DOI
64809a52-f703-4aec-b3a5-eca808a971d0::b3e48131-280e-488b-8e95-4321bef2966e
Homo sapiens
27'692 cells h5ad
5.46 GB
 Not in ASAP Details
cellxgene
sc
Cutaneous melanoma, lymph node metastasis Puck_220215_13 Publication DOI
89972213-8510-49c3-a55a-01cd248ef88a
Homo sapiens
27'757 cells x 29'586 genes h5ad
27.8 MB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the spinal cord Publication DOI
8d739cc9-4043-40cc-92d5-7b328f2f8ae1
Danio rerio
27'772 cells x 32'031 genes h5ad
25.2 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191204_18 Publication DOI
3483835a-fdd2-4589-8de3-530e2a13ad14
Mus musculus
27'814 cells x 18'729 genes h5ad
6.94 MB
 Not in ASAP Details
cellxgene
sc
10X Visium spatial transcriptomics on tumor-normal interface tissue sections Publication DOI
eaf0c852-1dff-47ab-8de2-a33a59969a40
Homo sapiens
27'912 cells x 35'469 genes h5ad
91.3 MB
 Not in ASAP Details
hca
sc
Mapping single-cell transcriptomes in the intra-tumoral and associated territ... Publication DOI
8f1f653d-3ea1-4d8e-b4a7-b97dc852c2b1::1cf6d16a-a454-475a-8885-505541ad7802
Homo sapiens
27'912 cells h5ad
1.06 GB
 Not in ASAP Details
cellxgene
sc
CD34+ Fetal Bone Marrow, Fetal Liver, Cord Blood (CITE-seq) Publication DOI
471647b3-04fe-4c76-8372-3264feb950e8
Homo sapiens
27'998 cells x 31'042 genes h5ad
578 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebellum (CB) - Lateral hemisphere of cerebellum - CBL Publication DOI
a59ba9fa-1407-4f15-8c56-d3637421570d
Homo sapiens
28'028 cells x 58'232 genes h5ad
156 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebral cortex (Cx) - Cuneus, rostral part - Area Prostriata - Pro Publication DOI
ff7d15fa-f4b6-4a0e-992e-fd0c9d088ded
Homo sapiens
28'051 cells x 58'232 genes h5ad
333 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Hypothalamus (HTH) - mammillary region of HTH (HTHma) - mammillar... Publication DOI
5bc23cb2-8cfc-4960-bab1-c3027fbeefc4
Homo sapiens
28'155 cells x 58'232 genes h5ad
382 MB
 Not in ASAP Details
cellxgene
sc
ALL- Cells of gingivo-buccal oral squamous cell carcinoma Publication DOI
55ca4411-8c7d-4aef-a572-50852e030c05
Homo sapiens
28'186 cells x 26'364 genes h5ad
196 MB
 Not in ASAP Details
ebi_sc
sc
The Single Cell Transcriptomic Landscape of Early Human Diabetic Nephropathy Publication DOI
E-GEOD-131882
Homo sapiens
28'348 cells h5ad
1 GB
 Not in ASAP Details
matkp
sc
Single-nuclei transcriptome of human visceral adipose tissue, 2022 Publication DOI
snRNA_StriederBarboza2022_Humans_SCP1903_VAT
Homo sapiens
28'356 cells zip
74.7 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in the healthy human kidney: Puck_200104_20 Publication DOI
7f479f74-5a7e-4666-9f0d-3af0b341eb0d
Homo sapiens
28'422 cells x 24'818 genes h5ad
27.4 MB
 Not in ASAP Details
matkp
sc
Single cell atlas of human subcutaneous adipose tissue (whole cell), 2022 Publication DOI
SingleCell_Emont2022_Humans_SCP1376_WC_SAT
Homo sapiens
28'465 cells zip
135 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_200210_03 Publication DOI
6bbfca2f-b2fb-4285-98d2-19fa9b9f6692
Mus musculus
28'577 cells x 20'318 genes h5ad
17.9 MB
 Not in ASAP Details
cellxgene
sc
scRNA-seq analysis of stromal cells of healthy human fallopian tubes Publication DOI
03c544fb-a103-4d18-9230-eae9cfee3af2
Homo sapiens
28'691 cells x 36'020 genes h5ad
425 MB
 Not in ASAP Details
cellxgene
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra -... Publication DOI
c3fe3c1e-5bf8-4678-b74a-79899243ad41
Homo sapiens
28'702 cells x 22'489 genes h5ad
211 MB
 Not in ASAP Details
cellxgene
sc
Vip - neocortex: Human variation study (HVS) Publication DOI
93091496-be48-4122-b945-9af9c22a7535
Homo sapiens
28'718 cells x 18'736 genes h5ad
2.34 GB
 Not in ASAP Details
cellxgene
sc
Dissection: Body of hippocampus (HiB) - Rostral CA1-CA3 Publication DOI
182f6a56-7360-4924-a74e-1772e07b3031
Homo sapiens
28'724 cells x 58'232 genes h5ad
343 MB
 Not in ASAP Details
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