External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Spatial transcriptomics in mouse: Puck_200104_07 Publication DOI
8680267b-9cb3-4660-ac8d-a8ee0de700be
Mus musculus
31'194 cells x 21'107 genes h5ad
23.2 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Paleocortex (PalCx) - Anterior Olfactory Nucleus - AON Publication DOI
f502c312-05dc-4fd4-a762-92a63e92b539
Homo sapiens
31'230 cells x 58'232 genes h5ad
389 MB
 Not in ASAP Details
cellxgene
sc
HLiCA - human liver mesenchyme cells Publication DOI
199febfe-32c1-4cf7-9bd9-745206458d06
Homo sapiens
31'278 cells x 32'624 genes h5ad
375 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Thalamus (THM) - Anterior nuclear complex - ANC Publication DOI
e8681d74-ac9e-4be5-be14-1cf1bbd54dd7
Homo sapiens
31'307 cells x 58'232 genes h5ad
388 MB
 Not in ASAP Details
broad_scp
sc
HCA LungMAP COVID-19 Vanderbilt Kropski bioRxiv Habermann
SCP897
 31'326 cells x 27 genes counts_table
429 KB
 Not in ASAP Details
cellxgene
sc
Major cell cluster: Oligodendrocytes Publication DOI
a99b49e5-07fc-46a8-a161-201345a97a54
Mus musculus
31'387 cells x 45'525 genes h5ad
321 MB
 Not in ASAP Details
cellxgene
sc
Minor Salivary Gland Atlas Publication DOI
e0549fbf-cf9c-401a-b85f-6ba00d916e43
Homo sapiens
31'468 cells x 35'377 genes h5ad
145 MB
 Not in ASAP Details
cellxgene
sc
15 leukemic bone marrow donors Publication DOI
b3a5a10f-b1cb-4e8e-abce-bf345448625b
Homo sapiens
31'586 cells x 458 genes h5ad
26.2 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq on enriched cardiac fibroblasts from the healthy, sham or... Publication DOI
E-MTAB-9583
Mus musculus
31'588 cells h5ad
1.1 GB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191204_22 Publication DOI
526a2472-0913-4f36-92f1-72f58ddf9524
Mus musculus
31'600 cells x 21'154 genes h5ad
22.9 MB
 Not in ASAP Details
ebi_sc
sc
Profiling of CD34+ cells from human bone marrow to understand hematopoiesis Publication DOI
E-HCAD-6
Homo sapiens
31'634 cells h5ad
1.2 GB
 Not in ASAP Details
cellxgene
sc
A single-cell atlas of the healthy breast tissues reveals clinically relevant... Publication DOI
de985818-285f-4f59-9dbd-d74968fddba3
Homo sapiens
31'696 cells x 32'397 genes h5ad
334 MB
 Not in ASAP Details
ebi_sc
sc
Spatio-temporal immune zonation of the human kidney Publication DOI
E-HCAD-10
Homo sapiens
31'711 cells h5ad
1.2 GB
 Not in ASAP Details
cellxgene
sc
Human embryonic male gonadal tissue Publication DOI
43dc52cb-92eb-4256-b3a8-5ef220b3d292
Homo sapiens
31'749 cells x 35'476 genes h5ad
362 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA sequencing of naive and primed human pluripotent stem cells t... Publication DOI
E-MTAB-10018
Homo sapiens
31'795 cells h5ad
2 GB
 Not in ASAP Details
hca
sc
Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis. Publication DOI
cd61771b-661a-4e19-b269-6e5d95350de6::5b177bff-ad3a-4c18-8bbe-d4dafdd940a2
Homo sapiens
31'872 cells mtx
492 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq of Drosophila melanogaster male late third instar larval ... Publication DOI
E-GEOD-125947
Drosophila melanogaster
31'893 cells h5ad
553 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebral cortex (Cx) - Occipitotemporal (fusiform) gyrus, tempora... Publication DOI
f8dda921-5fb4-4c94-a654-c6fc346bfd6d
Homo sapiens
31'899 cells x 58'232 genes h5ad
357 MB
 Not in ASAP Details
cellxgene
sc
L5IT - neocortex: Human variation study (HVS) Publication DOI
34229bdc-a895-4394-8820-574e4028d8c6
Homo sapiens
31'924 cells x 18'736 genes h5ad
2.85 GB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191206_02 Publication DOI
3ddfa0d8-ae3d-4970-9660-aa8dfbb98b63
Mus musculus
31'954 cells x 20'776 genes h5ad
18.5 MB
 Not in ASAP Details
ebi_sc
sc
A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cord Publication DOI
E-GEOD-141807
Drosophila melanogaster
32'004 cells h5ad
521 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191204_13 Publication DOI
03b3e7b1-1d38-4b39-b996-28ace9c65492
Mus musculus
32'070 cells x 21'914 genes h5ad
23.3 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebral cortex (Cx) - Cingulate gyrus, rostral (CgGr) - Ventral ... Publication DOI
3f31f8ce-bbf6-4df8-8203-aa240ed03026
Homo sapiens
32'157 cells x 58'232 genes h5ad
449 MB
 Not in ASAP Details
broad_scp
sc
scRNAseq on livers from male mice on a 52 week Western Diet or Chow Diet. Publication DOI
SCP3190
Mus musculus
32'282 cells x 14'161 genes h5ad
3.85 GB
 Not in ASAP Details
cellxgene
sc
Dissection: Midbrain (M) - Inferior colliculus and nearby nuclei - IC Publication DOI
5e5ab909-f73f-4b57-98a0-6d2c5662f6a4
Homo sapiens
32'306 cells x 58'232 genes h5ad
330 MB
 Not in ASAP Details
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