External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
immune cells Publication DOI
1e5bd3b8-6a0e-4959-8d69-cafed30fe814
Homo sapiens
35'699 cells x 23'775 genes h5ad
324 MB
 Not in ASAP Details
cellxgene
sc
Spleen - A single-cell transcriptomic atlas characterizes ageing tissues in t... Publication DOI
e2b469d4-b5c3-4a35-9d19-ee71ce61cae0
Mus musculus
35'718 cells x 17'943 genes h5ad
405 MB
 Not in ASAP Details
cellxgene
sc
Human adult and growing molar teeth Publication DOI
5eb05c46-9d59-4971-8bcb-2660f74860b9
Homo sapiens
35'805 cells x 21'304 genes h5ad
83.3 MB
 Not in ASAP Details
cellxgene
sc
Renal cell carcinoma, post aPD1, lung metastasis Puck_220408_15 Publication DOI
07efa1c3-7649-43d8-b798-e26a0145ee65
Homo sapiens
35'839 cells x 29'514 genes h5ad
27.3 MB
 Not in ASAP Details
broad_scp
sc
HCA LungMAP COVID-19 Skeletal Muscle Cross Tissue
SCP899
 35'842 cells x 27 genes counts_table
143 KB
 Not in ASAP Details
broad_scp
sc
Molecular evidence for early deuterostome origins of ovarian cell types and n... Publication DOI
SCP3291
Patiria miniata
35'877 cells x 20'228 genes h5ad
461 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191204_16 Publication DOI
b18c3fe3-ac84-4728-8a3d-cff8eafaf9d1
Mus musculus
35'896 cells x 20'914 genes h5ad
21.2 MB
 Not in ASAP Details
cellxgene
sc
Lung cancer 4 patients archival FFPE samples profiling with Chromium FLEX Publication DOI
1e4214ce-7347-4ec7-97b3-fcf7c1938e8b
Homo sapiens
35'954 cells x 18'063 genes h5ad
479 MB
 Not in ASAP Details
cellxgene
sc
Helmsley_gut_cell_pediatric Publication DOI
5d4415d1-cfcd-4b43-b2b2-138b5afd68af
Homo sapiens
35'957 cells x 32'344 genes h5ad
389 MB
 Not in ASAP Details
cellxgene
sc
Bone marrow Publication DOI
76cc3e9f-6aa1-4fdb-ba02-fa7b9fc8cac9
Microcebus murinus
35'959 cells x 16'400 genes h5ad
209 MB
 Details
cellxgene
sc
Spatial transcriptomics in the healthy human kidney: Puck_200903_12 Publication DOI
9df7a9ce-4298-4d65-9e89-33d83ac8bb69
Homo sapiens
35'987 cells x 26'178 genes h5ad
65.9 MB
 Not in ASAP Details
cellxgene
sc
Innervated only Publication DOI
2ab892f9-d2b0-40d0-9a62-a376ee5d4334
Mus musculus
36'191 cells x 24'469 genes h5ad
290 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191223_19 Publication DOI
e6e6aec8-c3e4-4e66-8301-e9325528f683
Mus musculus
36'299 cells x 21'135 genes h5ad
23.4 MB
 Not in ASAP Details
cellxgene
sc
Normal immune cells landscape of infant KMT2Ar B-ALL Publication DOI
738942eb-ac72-44ff-a64b-8943b5ecd8d9
Homo sapiens
36'313 cells x 19'809 genes h5ad
153 MB
 Not in ASAP Details
ebi_sc
sc
Single cell sequencing of renal endothelial cell heterogeneity and metabolic ... Publication DOI
E-MTAB-8145
Mus musculus
36'348 cells h5ad
672 MB
 Not in ASAP Details
cellxgene
sc
fetal and neonatal human small intestine cells Publication DOI
3f32121d-126b-4e8d-9f69-d86502d2a1b1
Homo sapiens
36'359 cells x 32'383 genes h5ad
1.71 GB
 Not in ASAP Details
ebi_sc
sc
Single-Cell Transcriptome Atlas of Murine Endothelial Cells Publication DOI
E-MTAB-8077
Mus musculus
36'594 cells h5ad
786 MB
 Not in ASAP Details
cellxgene
sc
Erythropoietic
5f2d5734-b90a-4d19-bb5f-1ff473259d10
Homo sapiens
36'639 cells x 32'397 genes h5ad
71.2 MB
 Not in ASAP Details
cellxgene
sc
Cutaneous melanoma, lymph node metastasis Puck_220215_14 Publication DOI
d4dc4cfe-7da5-4e56-bf96-83f01082f5df
Homo sapiens
36'785 cells x 31'234 genes h5ad
38.8 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA Seq of cortex cells from adult human ovaries Publication DOI
E-MTAB-8381
Homo sapiens
36'785 cells h5ad
898 MB
 Not in ASAP Details
ebi_sc
sc
Neuronal diversity and convergence in a visual system developmental atlas part 2 Publication DOI
E-CURD-134
Drosophila melanogaster
36'802 cells h5ad
522 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Tail of Hippocampus (HiT) - Caudal Hippocampus - CA1-CA3 Publication DOI
d2b5efc1-14c6-4b5f-bd98-40f9084872d7
Homo sapiens
36'886 cells x 58'232 genes h5ad
511 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Paleocortex (PalCx) - Piriform cortex - Pir Publication DOI
d02287f3-408b-438d-9131-999e460cbd0e
Homo sapiens
36'941 cells x 58'232 genes h5ad
465 MB
 Not in ASAP Details
broad_scp
sc
Aging Mouse Brain Publication DOI
SCP263
 37'069 cells x 14'699 genes counts_table
433 MB
 Not in ASAP Details
cellxgene
sc
CD19-CARpos and CARneg T cells Publication DOI
460dfe21-0550-4521-92fe-db0f3036d8b0
Homo sapiens
37'100 cells x 32'357 genes h5ad
198 MB
 Not in ASAP Details
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