External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
snmCT-seq of human dorsolateral prefrontal cortex (Brodmann area 46) Publication DOI
43aa19d2-c723-4822-979d-d2f0239835e0
Homo sapiens
37'121 cells x 59'394 genes h5ad
1.34 GB
 Not in ASAP Details
cellxgene
sc
Cutaneous melanoma, lymph node metastasis Puck_220408_12 Publication DOI
b3052902-613c-4b04-a0f5-bafd397bb125
Homo sapiens
37'193 cells x 29'196 genes h5ad
30.6 MB
 Not in ASAP Details
cellxgene
sc
Major cell cluster: Cardiomyocytes Publication DOI
57b15e23-7838-4cae-8d72-9d4735b6d0f4
Mus musculus
37'205 cells x 45'525 genes h5ad
530 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq of tumor-infiltrating lymphocytes in metastatic uveal mel... Publication DOI
E-CURD-84
Homo sapiens
37'218 cells h5ad
1.2 GB
 Not in ASAP Details
broad_scp
sc
HCA LungMAP COVID-19 Northwestern Misharin 2018 Reyfman
SCP881
 37'260 cells x 27 genes counts_table
461 KB
 Not in ASAP Details
cellxgene
sc
Cutaneous melanoma, lymph node metastasis Puck_220408_09 Publication DOI
ae4552dc-e2ea-4d67-b375-03ec7480f780
Homo sapiens
37'275 cells x 28'747 genes h5ad
31.7 MB
 Not in ASAP Details
cellxgene
sc
all.ENDOTHELIA.nocbm Publication DOI
0a101f64-84bb-48ba-a7bf-2d50447c32df
Callithrix jacchus
37'364 cells x 13'414 genes h5ad
258 MB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the retina Publication DOI
de3d091b-c669-425f-ab36-9a257105f69a
Danio rerio
37'385 cells x 32'031 genes h5ad
31.6 MB
 Not in ASAP Details
cellxgene
sc
Figure 3 Publication DOI
e500acbf-f166-4c46-b290-f93506cf26d3
Homo sapiens
37'428 cells x 27'094 genes h5ad
403 MB
 Not in ASAP Details
cellxgene
sc
Central Cornea Publication DOI
a4157949-6f2a-40e2-b960-63f6e2bde918
Homo sapiens
37'485 cells x 59'413 genes h5ad
462 MB
 Not in ASAP Details
cellxgene
sc
Lymphoid cells Publication DOI
b3d060c6-bbd7-4db0-9ef7-9df42475875a
Homo sapiens
37'502 cells x 32'383 genes h5ad
134 MB
 Not in ASAP Details
cellxgene
sc
Renal cell carcinoma, post aPD1, lung metastasis Puck_220408_20 Publication DOI
18fd0190-229d-4d2b-8f28-1e40c49c750d
Homo sapiens
37'563 cells x 30'411 genes h5ad
28.4 MB
 Not in ASAP Details
cellxgene
sc
Renal cell carcinoma, post aPD1, lung metastasis Puck_220408_14 Publication DOI
4aefec71-da4e-48ec-a910-c542b5807c7d
Homo sapiens
37'568 cells x 29'886 genes h5ad
27 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebral cortex (Cx) - Temporal pole (TP) - Temporopolar area - A38 Publication DOI
c2aad8fc-b63b-4f9b-9cfd-baf7bc9c1771
Homo sapiens
37'642 cells x 58'232 genes h5ad
540 MB
 Not in ASAP Details
cellxgene
sc
donor_p13_trophoblasts Publication DOI
f171db61-e57e-4535-a06a-35d8b6ef8f2b
Homo sapiens
37'675 cells x 28'171 genes h5ad
472 MB
 Not in ASAP Details
hca
sc
Spatial multiomics map of trophoblast development in early pregnancy Publication DOI
aecfd908-674c-4d4e-b36e-0c1ceab02245::faae7416-819b-479d-b1ec-3b42ccce4044
Homo sapiens
37'675 cells h5ad
1.57 GB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191204_23 Publication DOI
9a32e8f2-a570-4eef-ae25-a3919f98049b
Mus musculus
37'742 cells x 21'369 genes h5ad
19.5 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebral cortex (Cx) - Subcallosal Gyrus (SCG) - Subgenual (subca... Publication DOI
77c1c785-809f-4065-8c54-6a0170783256
Homo sapiens
37'767 cells x 58'232 genes h5ad
508 MB
 Not in ASAP Details
cellxgene
sc
Plasma cells Publication DOI
7274e79f-30b2-4b4d-bb53-fad600a55aff
Homo sapiens
37'809 cells x 38'361 genes h5ad
255 MB
 Not in ASAP Details
cellxgene
sc
snRNA-seq of human subcutaneous adipose tissue - all cells Publication DOI
821a8e3e-87ec-41ee-bd69-cd4377057d38
Homo sapiens
37'879 cells x 35'477 genes h5ad
357 MB
 Not in ASAP Details
matkp
sc
Human subcutaneous adipocyte atlases uncover classical and specialized adipoc... Publication DOI
snRNA_Lazarescu2023_Humans_SAT
Homo sapiens
37'879 cells zip
395 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Head of hippocampus (HiH) - Uncal CA1-CA3 Publication DOI
3f56901c-dd4a-47d6-b60b-7b0c0111cfb2
Homo sapiens
37'911 cells x 58'232 genes h5ad
385 MB
 Not in ASAP Details
broad_scp
sc
HCA LungMAP COVID-19 Prostate Cross Tissue
SCP887
 37'969 cells x 27 genes counts_table
176 KB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in the healthy human kidney: Puck_200903_10 Publication DOI
ff77ee42-ed01-4e50-8413-4cea1f6fbcbc
Homo sapiens
38'024 cells x 26'243 genes h5ad
57.6 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebral cortex (Cx) - Postcentral gyrus (PoCG) - Primary somatos... Publication DOI
56c33a38-2732-4e53-a9c1-1bc61eda9a99
Homo sapiens
38'188 cells x 58'232 genes h5ad
501 MB
 Not in ASAP Details
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