External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Combined human neural dataset Publication DOI
b62f728b-a7eb-4889-8162-b3d457de93b9
Homo sapiens
43'485 cells x 32'397 genes h5ad
477 MB
 Not in ASAP Details
cellxgene
sc
Individual Single-Cell RNA-seq PBMC Data from Lee et al. Publication DOI
4c4cd77c-8fee-4836-9145-16562a8782fe
Homo sapiens
43'512 cells x 21'649 genes h5ad
413 MB
 Not in ASAP Details
broad_scp
sc
HCA LungMAP COVID-19 Lung Cross Tissue
SCP878
 43'527 cells x 27 genes counts_table
205 KB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq of nasal cavity mucosa cells of mice stimulated with inte... Publication DOI
E-CURD-52
Mus musculus
43'677 cells h5ad
1.1 GB
 Not in ASAP Details
cellxgene
sc
MRCA: scRNA-seq of the mouse retina - amacrine cell subclass Publication DOI
a34c5975-4191-4c0b-b970-f92ee9a6aca2
Mus musculus
43'823 cells x 31'671 genes h5ad
427 MB
 Not in ASAP Details
broad_scp
sc
MRCA: scRNA-seq of the mouse retina - amacrine cell subclass Publication DOI
SCP2557
Mus musculus
43'823 cells x 32'152 genes h5ad
426 MB
 Not in ASAP Details
cellxgene
sc
Organoid - Cell Types of the Human Retina and Its Organoids at Single-Cell Re... Publication DOI
7e7f63c5-d964-40be-83de-ecbcccafd233
Homo sapiens
43'857 cells x 55'446 genes h5ad
377 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA sequencing of three IDHwt glioblastoma patient tumors Publication DOI
E-MTAB-9435
Homo sapiens
44'059 cells h5ad
1.5 GB
 Not in ASAP Details
broad_scp
sc
Molecular classification of zebrafish retinal ganglion cells links single gen...
SCP992
 44'085 cells x 16'639 genes counts_table
2.07 GB
 Not in ASAP Details
cellxgene
sc
Major cell cluster: B cells Publication DOI
fca9660b-74b5-4172-a554-212a03d54fc6
Mus musculus
44'352 cells x 45'525 genes h5ad
328 MB
 Not in ASAP Details
ebi_sc
sc
Single-nucleus RNA-seq resolves spatiotemporal developmental trajectories in ... Publication DOI
E-ENAD-54
Solanum lycopersicum
44'362 cells h5ad
1.1 GB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in the healthy human kidney: Puck_200903_13 Publication DOI
88b7da92-178d-4f27-bc18-b0165b256c67
Homo sapiens
44'588 cells x 26'491 genes h5ad
85.8 MB
 Not in ASAP Details
cellxgene
sc
Single-cell atlas of peripheral immune response to SARS-CoV-2 infection Publication DOI
456e8b9b-f872-488b-871d-94534090a865
Homo sapiens
44'721 cells x 24'505 genes h5ad
207 MB
 Not in ASAP Details
broad_scp
sc
Cross-sample Alignment of Spatial Omics at Single-cell Resolution
SCP2203
Mus musculus
44'751 cells x 5'413 genes h5ad
964 MB
 Not in ASAP Details
cellxgene
sc
Supercluster: LAMP5-LHX6 and Chandelier Publication DOI
8f48c031-6692-4c82-b6c2-e4ad35cbc0aa
Homo sapiens
45'118 cells x 58'232 genes h5ad
509 MB
 Not in ASAP Details
cellxgene
sc
L6 IT - MTG: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
de104f7e-14fa-4795-bd19-b5ee2c1563e0
Homo sapiens
45'252 cells x 35'483 genes h5ad
1.61 GB
 Not in ASAP Details
ebi_sc
sc
Cell state diversity promotes metastasis through heterotypic cluster formatio... Publication DOI
E-GEOD-152998
Danio rerio
45'444 cells h5ad
1.6 GB
 Not in ASAP Details
cellxgene
sc
white matter - all cells Publication DOI
c05e6940-729c-47bd-a2a6-6ce3730c4919
Homo sapiens
45'528 cells x 32'902 genes h5ad
414 MB
 Not in ASAP Details
broad_scp
sc
Multi-omic profiling of the developing human cerebral cortex at the single ce...
SCP1859
Homo sapiens
45'549 cells x 19'771 genes counts_table
1.68 GB
 Not in ASAP Details
cellxgene
sc
T cells from gastric cancer patients Publication DOI
ca140407-efd4-48e3-a040-524b8a7752cc
Homo sapiens
45'698 cells x 35'458 genes h5ad
408 MB
 Not in ASAP Details
ebi_sc
sc
Neonatal and adult human testis defined at the single-cell level Publication DOI
E-GEOD-124263
Homo sapiens
46'118 cells h5ad
1.2 GB
 Not in ASAP Details
cellxgene
sc
T cells Publication DOI
486486d4-9462-43e5-9249-eb43fa5a49a6
Homo sapiens
46'140 cells x 24'540 genes h5ad
1.72 GB
 Not in ASAP Details
cellxgene
sc
Dissection: Thalamus (THM) - lateral nuclear complex of thalamus (LNC) - Pulv... Publication DOI
ecd9230d-c571-4dab-abd3-8b54c74833f0
Homo sapiens
46'453 cells x 58'232 genes h5ad
450 MB
 Not in ASAP Details
cellxgene
sc
Single-cell multiomic profiling of human lungs across age groups Publication DOI
3de0ad6d-4378-4f62-b37b-ec0b75a50d94
Homo sapiens
46'500 cells x 25'799 genes h5ad
325 MB
 Not in ASAP Details
cellxgene
sc
Mouse dermal fibroblast atlas Publication DOI
b2dd6bc9-36ed-4cd4-a2b3-51f6a2386afa
Mus musculus
46'549 cells x 29'831 genes h5ad
1.09 GB
 Not in ASAP Details
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