External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
ebi_sc
sc
Modeling Notch-induced tumor cell survival in the Drosophila ovary identifies... Publication DOI
E-CURD-124
Drosophila melanogaster
49'095 cells h5ad
511 MB
 Not in ASAP Details
cellxgene
sc
Figure 1 Publication DOI
5d3fc988-765d-48ba-bfb5-151ef2988cac
Homo sapiens
49'109 cells x 27'517 genes h5ad
435 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Midbrain (M) - Substantia Nigra, Red Nucleus, and nearby nuclei -... Publication DOI
9ec34295-ab16-47e2-af33-b884143e520b
Homo sapiens
49'110 cells x 58'232 genes h5ad
367 MB
 Not in ASAP Details
cellxgene
sc
Individual Single-Cell RNA-seq PBMC Data from Arunachalam et al. Publication DOI
59b69042-47c2-47fd-ad03-d21beb99818f
Homo sapiens
49'139 cells x 22'481 genes h5ad
484 MB
 Not in ASAP Details
broad_scp
sc
Perturb-seq Publication DOI
SCP24
 49'234 cells x 11'738 genes counts_table
2.78 GB
 Not in ASAP Details
broad_scp
sc
Drop-Seq Publication DOI
SCP7
 49'300 cells x 24'658 genes counts_table
2.27 GB
 Not in ASAP Details
cellxgene
sc
Single cell RNA-seq of human heart cells Publication DOI
2e9d2f32-4cfb-49b5-b990-cbf4c241214e
Homo sapiens
49'359 cells x 56'689 genes h5ad
530 MB
 Not in ASAP Details
cellxgene
sc
Human Multiple Cortical Areas SMART-seq Publication DOI
a5d5c529-8a1f-40b5-bda3-35208970070d
Homo sapiens
49'417 cells x 35'676 genes h5ad
2.52 GB
 Not in ASAP Details
broad_scp
sc
Stem cell differentiation trajectories in Hydra resolved at single cell resol... Publication DOI
SCP260
 49'442 cells x 50'480 genes rds
5.32 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Pons (Pn) - Pontine reticular formation - PnRF Publication DOI
7c1c3d47-3166-43e5-9a95-65ceb2d45f78
Homo sapiens
49'512 cells x 58'232 genes h5ad
402 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA sequencing analysis of mouse resident and infiltrating immune... Publication DOI
E-MTAB-8002
Mus musculus
49'616 cells h5ad
1.1 GB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the forebrain Publication DOI
0c2d5535-3099-485f-8a0d-fcd3c459a39b
Danio rerio
49'637 cells x 32'031 genes h5ad
40.6 MB
 Not in ASAP Details
cellxgene
sc
Mouse perinatal heart maturation scRNA-seq Publication DOI
731e0ae7-e600-470f-a6dc-8c35c28d6c3d
Mus musculus
49'769 cells x 22'965 genes h5ad
301 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq analysis of 20 organs and tissues from individual mice cr... Publication DOI
E-ENAD-15
Mus musculus
50'003 cells h5ad
3 GB
 Not in ASAP Details
cellxgene
sc
Single cell analysis of mouse and human prostate reveals novel fibroblasts wi... Publication DOI
03c0e874-f984-4e6c-9d2a-26ef8507dbbc
Mus musculus
50'206 cells x 20'634 genes h5ad
695 MB
 Not in ASAP Details
cellxgene
sc
Gland Atlas Publication DOI
771c7f5e-01c9-4faf-ab7f-ee8a7cf9d285
Homo sapiens
50'240 cells x 35'377 genes h5ad
247 MB
 Not in ASAP Details
cellxgene
sc
Healthy human liver: hepatocytes Publication DOI
8faa2c07-0080-4627-b1d7-e645a780d752
Homo sapiens
50'259 cells x 32'596 genes h5ad
611 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebral cortex (Cx) - Anterior parahippocampal gyrus, posterior ... Publication DOI
52ea546e-9229-40ef-b048-a2e694dd73e8
Homo sapiens
50'362 cells x 58'232 genes h5ad
729 MB
 Not in ASAP Details
ebi_sc
sc
Transcriptional changes in the mammary gland during lactation revealed by sin... Publication DOI
E-MTAB-10855
Homo sapiens
50'386 cells h5ad
1.9 GB
 Not in ASAP Details
broad_scp
sc
HCA LungMAP COVID-19 Sanger Meyer 2019 Madissoon
SCP900
 50'426 cells x 27 genes counts_table
581 KB
 Not in ASAP Details
ebi_sc
sc
The atlas of the human hypertrophied heart reveals impaired cell communication Publication DOI
E-MTAB-11268
Homo sapiens
50'499 cells h5ad
1.8 GB
 Not in ASAP Details
cellxgene
sc
Extended - Myeloid cells Publication DOI
9c235282-2b6f-4f74-8f16-7d3ac1b51371
Homo sapiens
50'570 cells x 35'461 genes h5ad
359 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Basal nuclei (BN) - Globus pallidus (GP) - External segment of gl... Publication DOI
18500fcd-9960-49cb-8a8e-7d868dc14efe
Homo sapiens
50'830 cells x 58'232 genes h5ad
393 MB
 Not in ASAP Details
cellxgene
sc
Pulp Atlas Publication DOI
ae45e70d-cae7-45f5-8ee8-6655f208273c
Homo sapiens
50'927 cells x 35'377 genes h5ad
266 MB
 Not in ASAP Details
cellxgene
sc
Mouse Somatic Cell Lineage Publication DOI
be46dfdc-0f99-4731-8957-64ca37364985
Mus musculus
50'933 cells x 25'394 genes h5ad
882 MB
 Not in ASAP Details
of 674