External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
All cells type from five healthy donors Publication DOI
8f3e7fcf-0b16-4a29-a5f1-a7a8b267d689
Homo sapiens
50'992 cells x 35'477 genes h5ad
649 MB
 Not in ASAP Details
cellxgene
sc
Sex-Specific Control of Human Heart Maturation by the Progesterone Receptor. Publication DOI
99e317c0-1fab-4f73-b511-859e752fd1c3
Homo sapiens
51'176 cells x 35'477 genes h5ad
816 MB
 Not in ASAP Details
cellxgene
sc
A Single-Cell Atlas of Mouse White Adipose Tissue - Mouse ASPCs Publication DOI
4955c9f0-6b12-4929-85a7-c3fb4d4cb600
Mus musculus
51'227 cells x 24'551 genes h5ad
299 MB
 Not in ASAP Details
ebi_sc
sc
scRNA-Seq analysis of differentiation to primitive streak fate of mouse embry... Publication DOI
E-MTAB-10243
Mus musculus
51'545 cells h5ad
2.9 GB
 Not in ASAP Details
cellxgene
sc
Myeloid compartment Publication DOI
fe52003e-1460-4a65-a213-2bb1a508332f
Homo sapiens
51'552 cells x 35'469 genes h5ad
668 MB
 Not in ASAP Details
cellxgene
sc
Major cell cluster: Intestine Publication DOI
a77e5f1f-b842-4a55-ba6e-7c3d327f424b
Mus musculus
51'796 cells x 45'525 genes h5ad
668 MB
 Not in ASAP Details
cellxgene
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
01209dce-3575-4bed-b1df-129f57fbc031
Homo sapiens
51'876 cells x 53'792 genes h5ad
304 MB
 Not in ASAP Details
cellxgene
sc
Infant human neocortex cells Publication DOI
82f6af6d-5313-439a-9936-5e844be49a70
Homo sapiens
51'878 cells x 24'094 genes h5ad
150 MB
 Not in ASAP Details
broad_scp
sc
Scalable TCR synthesis and screening enables antigen reactivity mapping in vi...
SCP3412
 52'016 cells rds
4.88 GB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebellum (CB) - Cerebellar deep nuclei - CbDN Publication DOI
095940cb-7422-4510-96e2-cbafd961eb88
Homo sapiens
52'045 cells x 58'232 genes h5ad
305 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell profiling of cranial neural crest diversification across a verteb... Publication DOI
E-CURD-123
Danio rerio
52'305 cells h5ad
870 MB
 Not in ASAP Details
cellxgene
sc
Trabecular Meshwork and Corneal Scleral wedge Publication DOI
d967b47c-a9e6-4337-b2f4-977f690cb67f
Homo sapiens
52'309 cells x 59'413 genes h5ad
659 MB
 Not in ASAP Details
cellxgene
sc
Extended - Myeloid_with_neutrophils Publication DOI
40a0ade8-6067-4e22-9224-4d3c5e9bfc0d
Homo sapiens
52'404 cells x 35'461 genes h5ad
356 MB
 Not in ASAP Details
cellxgene
sc
A Single-Cell Atlas of Human White Adipose Tissue - Human ASPCs Publication DOI
b3be4624-0723-4f1d-846c-d31025da3718
Homo sapiens
52'482 cells x 28'101 genes h5ad
340 MB
 Not in ASAP Details
ebi_sc
sc
Single cell sequencing of colorectal tumors and adjacent non-malignant colon ... Publication DOI
E-MTAB-8410
Homo sapiens
52'587 cells h5ad
1.4 GB
 Not in ASAP Details
cellxgene
sc
All Cells Publication DOI
1fd5987c-c4c3-4138-900a-5aea2b59a6f7
Mus musculus
52'623 cells x 21'334 genes h5ad
420 MB
 Not in ASAP Details
cellxgene
sc
scRNA-seq data - perivascular cells Publication DOI
c8d40d53-387b-48f2-9f89-72bfdb9c7c9f
Homo sapiens
52'638 cells x 32'383 genes h5ad
364 MB
 Not in ASAP Details
cellxgene
sc
Supercluster: Lower rhombic lip Publication DOI
6538ce1b-7949-405f-b01c-a2c3e876baee
Homo sapiens
52'650 cells x 58'232 genes h5ad
747 MB
 Not in ASAP Details
cellxgene
sc
Single-Cell RNA Sequencing of Breast Tissues: Cell Subtypes and Cancer Risk F... Publication DOI
9a64bf99-ebe5-4276-93a8-bee9dff1cd47
Homo sapiens
52'681 cells x 20'052 genes h5ad
447 MB
 Not in ASAP Details
cellxgene
sc
Hepatocyte-1 cells from human healthy donor liver samples Publication DOI
234c23d0-d6cd-4612-a40d-e5811727564b
Homo sapiens
53'015 cells x 32'596 genes h5ad
419 MB
 Not in ASAP Details
cellxgene
sc
Bipolar cells in human retina Publication DOI
8f10185b-e0b3-46a5-8706-7f1799225d79
Homo sapiens
53'040 cells x 30'172 genes h5ad
2.95 GB
 Not in ASAP Details
broad_scp
sc
Pan-cancer cell line heterogeneity
SCP542
 53'513 cells x 22'722 genes counts_table
1.66 GB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq of mouse developing spinal cord Publication DOI
E-MTAB-7320
Mus musculus
53'549 cells h5ad
1.7 GB
 Not in ASAP Details
ebi_sc
sc
A single-cell analysis of the Arabidopsis vegetative shoot apex Publication DOI
E-CURD-83
Arabidopsis thaliana
53'581 cells h5ad
1.9 GB
 Not in ASAP Details
broad_scp
sc
Deep learning enables genetic analysis of the human thoracic aorta
SCP1265
Homo sapiens
54'092 cells x 33'693 genes h5ad
916 MB
 Not in ASAP Details
of 674