External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
ebi_sc
sc
Regulation of transcriptional states in acute liver failure by microbiome Publication DOI
E-MTAB-8263
Mus musculus
54'156 cells h5ad
1.1 GB
 Not in ASAP Details
cellxgene
sc
SCLC epithelial cells Publication DOI
34deb33b-a50e-4993-a38b-1c0e5079c1c2
Homo sapiens
54'313 cells x 24'540 genes h5ad
8.34 GB
 Not in ASAP Details
cellxgene
sc
All cells Publication DOI
e22482ee-19e8-40bc-9f6e-541dc3c82c20
Homo sapiens
54'753 cells x 53'122 genes h5ad
197 MB
 Not in ASAP Details
cellxgene
sc
B cell compartment Publication DOI
71be997d-ff75-41b9-8a9f-1288c865f921
Homo sapiens
54'934 cells x 35'469 genes h5ad
475 MB
 Not in ASAP Details
matkp
sc
Impact of aging on adipogenic precursor cells in mice (scRNA), 2023 (subcutan... Publication DOI
scRNA_Holman2023_Mouse
Mus musculus
54'987 cells zip
1.09 GB
 Not in ASAP Details
cellxgene
sc
Classical Monocyte sub_clusters of COVID-19 Immune Altas: Integration of 5 pu... Publication DOI
db0752b9-f20e-40b8-8997-992f3ae0bb2e
Homo sapiens
55'348 cells x 23'337 genes h5ad
448 MB
 Not in ASAP Details
ebi_sc
sc
A single-cell atlas of lymphocyte adaptive immune repertoires and transcripto... Publication DOI
E-CURD-77
Homo sapiens
55'456 cells h5ad
1.1 GB
 Not in ASAP Details
cellxgene
sc
A single-cell multi-omic atlas spanning the adult rhesus macaque brain (cell ... Publication DOI
04613344-661b-4b01-8167-00dde7af8065
Macaca mulatta
55'515 cells x 29'060 genes h5ad
91.9 MB
 Not in ASAP Details
cellxgene
sc
Lamp5 - DLPFC: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
0ed60482-a34f-4268-b576-d69cc30210f6
Homo sapiens
55'968 cells x 35'483 genes h5ad
1.69 GB
 Not in ASAP Details
cellxgene
sc
Dissection: Tail of Hippocampus (HiT) - Caudal Hippocampus - CA4-DGC Publication DOI
9f499d32-400d-4c42-ac9a-fb1481844fee
Homo sapiens
56'367 cells x 58'232 genes h5ad
493 MB
 Not in ASAP Details
cellxgene
sc
Amacrine cells in human retina Publication DOI
359f7af4-87d4-4117-9d6c-ca4cfa1f3f0b
Homo sapiens
56'507 cells x 30'172 genes h5ad
3.24 GB
 Not in ASAP Details
ebi_sc
sc
Single cell RNAseq of ankylosing spondylitis lymphocytes from peripheral bloo... Publication DOI
E-CURD-120
Homo sapiens
56'537 cells h5ad
1 GB
 Not in ASAP Details
cellxgene
sc
A Single-Cell Atlas of Human Lung Allograft Biopsies Reveals Fibrogenic Shift... Publication DOI
10c0c666-bd99-4a5c-b697-f1be835f5427
Homo sapiens
56'676 cells x 27'320 genes h5ad
1.1 GB
 Not in ASAP Details
broad_scp
sc
Epigenetic reprogramming of stromal cell states underpins pathologic tissue n...
SCP3258
Homo sapiens
56'689 cells x 49'838 genes h5ad
7.05 GB
 Not in ASAP Details
cellxgene
sc
Lung Parenchyma Publication DOI
2672b679-8048-4f5e-9786-f1b196ccfd08
Homo sapiens
57'019 cells x 24'349 genes h5ad
403 MB
 Not in ASAP Details
ebi_sc
sc
A single-cell atlas of the peripheral immune response to severe COVID-19 Publication DOI
E-GEOD-150728
Homo sapiens
57'096 cells h5ad
1.2 GB
 Not in ASAP Details
broad_scp
sc
Perturb-seq: K562 Publication DOI
SCP31
 57'120 cells x 13'957 genes counts_table
4.75 GB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNAseq of Tal1 knockout chimeric mouse embryos at embryonic day 8... Publication DOI
E-MTAB-7325
Mus musculus
57'333 cells h5ad
2.3 GB
 Not in ASAP Details
cellxgene
sc
all.MICROGLIA_MACROPHAGE.comp Publication DOI
c477bce4-66b3-4495-a8bb-4b51d88f65a1
Callithrix jacchus
57'414 cells x 12'669 genes h5ad
315 MB
 Not in ASAP Details
cellxgene
sc
Iris Publication DOI
9a281de7-cee5-4e80-8584-1929f46f152f
Homo sapiens
57'422 cells x 59'413 genes h5ad
672 MB
 Not in ASAP Details
matkp
sc
Single cell atlas of human subcutaneous adipose tissue (single-nucleus), 2022 Publication DOI
SingleCell_Emont2022_Humans_SCP1376_SN_SAT
Homo sapiens
57'599 cells zip
406 MB
 Not in ASAP Details
cellxgene
sc
Validation (Val) set of human colorectal tumor: Epithelial Publication DOI
d6dfdef1-406d-4efb-808c-3c5eddbfe0cb
Homo sapiens
57'723 cells x 30'104 genes h5ad
1.07 GB
 Not in ASAP Details
cellxgene
sc
Oligo - neocortex: Human variation study (HVS) Publication DOI
e34f3f89-3a48-4173-a06a-9e9803f2e2b9
Homo sapiens
57'855 cells x 18'736 genes h5ad
4.24 GB
 Not in ASAP Details
cellxgene
sc
Anomalous Epithelial Variations and Ectopic Inflammatory Response in Chronic ... Publication DOI
8fbed309-d3d4-441b-b3ff-e2dcbcec2d35
Homo sapiens
57'918 cells x 35'942 genes h5ad
809 MB
 Not in ASAP Details
cellxgene
sc
Vascular associated cells from human cardiac tissue with myocarditis and heal... Publication DOI
de916989-3523-4eed-a8e6-6999540f27d4
Homo sapiens
58'054 cells x 32'397 genes h5ad
1.04 GB
 Not in ASAP Details
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