External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Developmental single-cell atlas of the murine lung Publication DOI
047d57f2-4d14-45de-aa98-336c6f583750
Mus musculus
67'794 cells x 22'073 genes h5ad
706 MB
 Not in ASAP Details
cellxgene
sc
All Cells Publication DOI
fed1f5f6-f65a-4e95-89fd-eea106dff790
Mus musculus
67'903 cells x 20'210 genes h5ad
646 MB
 Not in ASAP Details
cellxgene
sc
Human Trophoblast Organoids Publication DOI
b7efc0ba-9136-4f3f-adb2-d07849e59a3d
Homo sapiens
67'996 cells x 35'469 genes h5ad
1.01 GB
 Not in ASAP Details
cellxgene
sc
Skin Publication DOI
f512b8b6-369d-4a85-a695-116e0806857f
Homo sapiens
68'036 cells x 19'358 genes h5ad
355 MB
 Not in ASAP Details
broad_scp
sc
GLP1RA_Brain_Aging_Reversal
SCP1182
Mus musculus
68'241 cells x 21'557 genes counts_table
5.17 GB
 Not in ASAP Details
cellxgene
sc
Single-cell atlas of 24 hormone therapy naive localised prostate cancers Publication DOI
881e0e6b-a185-45f1-9b56-81606e91e7ff
Homo sapiens
68'322 cells x 32'397 genes h5ad
700 MB
 Not in ASAP Details
cellxgene
sc
cortex.ASTROCYTES Publication DOI
db34a569-f76a-4b03-9d33-b295f3468f91
Callithrix jacchus
68'941 cells x 12'944 genes h5ad
568 MB
 Not in ASAP Details
cellxgene
sc
Healthy pediatric and adult human liver tissue Publication DOI
120cbe1a-9434-4e23-84bd-f570ac32300c
Homo sapiens
69'032 cells x 32'397 genes h5ad
1.3 GB
 Not in ASAP Details
cellxgene
sc
Cerebellum Publication DOI
b2dda353-0c96-42df-8dcd-1ea7429a6feb
Homo sapiens
69'174 cells x 26'326 genes h5ad
539 MB
 Not in ASAP Details
cellxgene
sc
snRNA-seq of human of the human retinal pigment epithelium and the choroid - ... Publication DOI
f28376c8-2ca0-419f-8e22-543f71457eb3
Homo sapiens
69'244 cells x 35'475 genes h5ad
791 MB
 Not in ASAP Details
ebi_sc
sc
Transcriptomic and clonal characterization of T cells in the human central ne... Publication DOI
E-HCAD-30
Homo sapiens
69'596 cells h5ad
1.5 GB
 Not in ASAP Details
cellxgene
sc
brainstem.all Publication DOI
428dbc01-99ad-4b7a-a1a8-0c5f6cdd57cb
Callithrix jacchus
69'605 cells x 13'178 genes h5ad
694 MB
 Not in ASAP Details
cellxgene
sc
Multiomics single-cell analysis of human pancreatic islets reveals novel cell... Publication DOI
37b21763-7f0f-41ae-9001-60bad6e2841d
Homo sapiens
69'645 cells x 25'629 genes h5ad
814 MB
 Not in ASAP Details
cellxgene
sc
Mouse Female Publication DOI
12967895-3d58-4e93-be2c-4e1bcf4388d5
Mus musculus
69'709 cells x 25'394 genes h5ad
1.21 GB
 Not in ASAP Details
ebi_sc
sc
GM-CSF-producing T helper cells: a distinct subset of T helper cells. Publication DOI
E-HCAD-29
Homo sapiens
69'900 cells h5ad
1.7 GB
 Not in ASAP Details
cellxgene
sc
Astrocyte - MTG: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
5097d77d-08fa-4105-a18f-4072d61522a4
Homo sapiens
70'009 cells x 35'483 genes h5ad
1.14 GB
 Not in ASAP Details
cellxgene
sc
Extended - Stomach Publication DOI
0d3807bf-97f0-4ec5-9611-15ada507f0df
Homo sapiens
70'090 cells x 35'461 genes h5ad
494 MB
 Not in ASAP Details
ebi_sc
sc
Single RNA-Seq of synovial tissue macrophages from Rheumatoid Arthritis patie... Publication DOI
E-MTAB-8322
Homo sapiens
70'246 cells h5ad
1.5 GB
 Not in ASAP Details
cellxgene
sc
Pregnant Uterus (All) Publication DOI
5bc42b88-bb76-4954-927b-8bb7369adc64
Homo sapiens
70'325 cells x 30'343 genes h5ad
800 MB
 Not in ASAP Details
cellxgene
sc
Tabula Sapiens - Spleen Publication DOI
cee11228-9f0b-4e57-afe2-cfe15ee56312
Homo sapiens
70'448 cells x 60'606 genes h5ad
2.47 GB
 Not in ASAP Details
cellxgene
sc
Organoid Publication DOI
4023a2bc-6325-47db-bfdf-9639e91042c2
Homo sapiens
70'495 cells x 24'220 genes h5ad
1.21 GB
 Not in ASAP Details
cellxgene
sc
A Single-Cell Atlas of Mouse White Adipose Tissue - Mouse immune cells Publication DOI
138423b0-4fde-47d2-acac-c2de8082a152
Mus musculus
70'547 cells x 24'551 genes h5ad
377 MB
 Not in ASAP Details
ebi_sc
sc
Immunophenotyping of COVID-19 and Influenza Underscores the Association of Ty... Publication DOI
E-GEOD-149689
Homo sapiens
70'553 cells h5ad
2.1 GB
 Not in ASAP Details
cellxgene
sc
iPain Atlas DRG Nociceptive Lineage Cells - SCENIC Publication DOI
f8c4782a-5be8-4de6-81b6-ec57ead9c7b5
Mus musculus
70'963 cells x 19'922 genes h5ad
566 MB
 Not in ASAP Details
cellxgene
sc
iPain Atlas DRG Nociceptive Lineage Cells - TF activity Publication DOI
e1b09351-423f-471b-998f-ff865cd2ca74
Mus musculus
70'963 cells x 19'922 genes h5ad
942 MB
 Not in ASAP Details
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