External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Single-cell longitudinal analysis of SARS-CoV-2 infection in human bronchial ... Publication DOI
030faa69-ff79-4d85-8630-7c874a114c19
Homo sapiens
77'650 cells x 24'018 genes h5ad
1 GB
 Not in ASAP Details
ebi_sc
sc
Neuronal vulnerability and multilineage diversity in multiple sclerosis Publication DOI
E-HCAD-35
Homo sapiens
77'891 cells h5ad
2.5 GB
 Not in ASAP Details
cellxgene
sc
MRCA: scRNA-seq of the mouse retina - RGC subclass Publication DOI
52ec814e-2ff6-4ab1-a1a1-d31404af47e3
Mus musculus
77'902 cells x 31'671 genes h5ad
1.27 GB
 Not in ASAP Details
broad_scp
sc
MRCA: scRNA-seq of the mouse retina - RGC subclass
SCP2558
Mus musculus
77'902 cells x 32'152 genes h5ad
1.22 GB
 Not in ASAP Details
cellxgene
sc
Supercluster: Deep-layer corticothalamic and 6b Publication DOI
caf8670f-e647-4f0c-bfba-163aa84ce602
Homo sapiens
78'396 cells x 58'232 genes h5ad
1.15 GB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq of of bone marrow derived mononuclear phagocytes derived ... Publication DOI
E-CURD-102
Oryctolagus cuniculus
78'786 cells h5ad
1 GB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the head mesenchyme Publication DOI
c3bfbe4d-d00c-4548-aca0-30cf75ac47e0
Danio rerio
78'799 cells x 32'031 genes h5ad
64.6 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA sequencing of mouse germ cells Publication DOI
E-MTAB-6946
Mus musculus
79'210 cells h5ad
3.1 GB
 Not in ASAP Details
cellxgene
sc
Inhibitory Publication DOI
0ecea697-0f69-4d40-88e1-7f854e17e2b3
Homo sapiens
79'294 cells x 60'305 genes h5ad
1 GB
 Not in ASAP Details
cellxgene
sc
Mouse Craniofacial Expression All Celltypes Publication DOI
db63e37d-3f18-467b-98c8-089b271454c3
Mus musculus
79'402 cells x 21'137 genes h5ad
774 MB
 Not in ASAP Details
cellxgene
sc
UMAP of Columnar cells Publication DOI
773b9b2e-70c8-40be-8cbb-e7b5abab360d
Homo sapiens
79'522 cells x 32'383 genes h5ad
766 MB
 Not in ASAP Details
cellxgene
sc
L23IT - neocortex: Human variation study (HVS) Publication DOI
1fc48734-35ee-4372-885c-95fd2674c75a
Homo sapiens
79'631 cells x 18'736 genes h5ad
7.08 GB
 Not in ASAP Details
cellxgene
sc
BrainAgingSpatialAtlas_snRNAseq Publication DOI
3bbb6cf9-72b9-41be-b568-656de6eb18b5
Mus musculus
79'667 cells x 20'929 genes h5ad
2.36 GB
 Not in ASAP Details
broad_scp
sc
Gradient of Developmental and Injury Reponse transcriptional states define fu... Publication DOI
SCP503
 79'862 cells x 20'288 genes counts_table
2.37 GB
 Not in ASAP Details
matkp
sc
Single cell atlas of human visceral adipose tissue (single-nucleus), 2022 Publication DOI
SingleCell_Emont2022_Humans_SCP1376_SN_VAT
Homo sapiens
80'085 cells zip
517 MB
 Not in ASAP Details
cellxgene
sc
Human Nurr-Positive Nuclei 10x scRNA-seq Publication DOI
92161459-9103-4379-ae34-73a38eee1d1d
Homo sapiens
80'576 cells x 33'295 genes h5ad
867 MB
 Not in ASAP Details
cellxgene
sc
Healthy and IFALD pediatric and adult human liver tissue Publication DOI
84cfa5aa-a0d1-415e-ac47-eb66c9cf8170
Homo sapiens
81'001 cells x 32'397 genes h5ad
1.55 GB
 Not in ASAP Details
cellxgene
sc
A single-cell multi-omic atlas spanning the adult rhesus macaque brain (cell ... Publication DOI
3cb0fbb6-2486-4bc1-828c-ea3b316ebf96
Macaca mulatta
81'014 cells x 29'060 genes h5ad
162 MB
 Not in ASAP Details
cellxgene
sc
Single-cell gene expression profiling of SARS-CoV-2 infected human cell lines... Publication DOI
ca421096-6240-4cee-8c12-d20899b3e005
Homo sapiens
81'736 cells x 15'605 genes h5ad
6.55 GB
 Not in ASAP Details
cellxgene
sc
L4 IT - DLPFC: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
9ff9f9ba-016b-4cbb-8899-45dc20860b8b
Homo sapiens
81'869 cells x 35'483 genes h5ad
3.42 GB
 Not in ASAP Details
cellxgene
sc
Single cell RNA sequencing of oropharyngeal squamous cell carcinoma Publication DOI
b6b5ea88-e092-46e4-b9c5-e93b52d5c195
Homo sapiens
82'844 cells x 35'468 genes h5ad
923 MB
 Not in ASAP Details
cellxgene
sc
Transcriptional connectivity of regulatory T cells in the tumor microenvironm... Publication DOI
d41f45c1-1b7b-4573-a998-ac5c5acb1647
Homo sapiens
82'991 cells x 24'476 genes h5ad
598 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell analysis of Crohn's disease lesions identifies a pathogenic cellu... Publication DOI
E-CURD-46
Homo sapiens
83'383 cells h5ad
1.6 GB
 Not in ASAP Details
cellxgene
sc
Single cell analysis of mouse and human prostate reveals novel fibroblasts wi... Publication DOI
574e9f9e-f8b4-41ef-bf19-89a9964fd9c7
Homo sapiens
83'451 cells x 26'791 genes h5ad
1.2 GB
 Not in ASAP Details
cellxgene
sc
scRNA-seq data - vascular cells Publication DOI
e47c65a8-7d2f-48b8-908e-04ea6505fa26
Homo sapiens
83'651 cells x 32'383 genes h5ad
764 MB
 Not in ASAP Details
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