External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
3-prime FGID data Publication DOI
6ceeaa86-9ceb-4582-b390-6d4dd6ff0572
Homo sapiens
89'849 cells x 32'088 genes h5ad
314 MB
 Not in ASAP Details
hca
sc
Concerted changes in the pediatric single-cell intestinal ecosystem before an... Publication DOI
474a4229-840e-4d63-82af-8d3aa615ee17::271c2364-ddf4-4116-a71c-5622f25fb5b0
Homo sapiens
89'849 cells mtx
1.68 GB
 Not in ASAP Details
cellxgene
sc
Cardiomyocytes from human cardiac tissue with myocarditis and healthy controls Publication DOI
064fa88b-78dc-4edd-b9cd-bcc16964c81e
Homo sapiens
90'273 cells x 32'397 genes h5ad
1.28 GB
 Not in ASAP Details
hca
sc
Spatial transcriptomics of healthy and fibrotic human liver at single-cell re... Publication DOI
64809a52-f703-4aec-b3a5-eca808a971d0::f43d099a-4a4f-401c-86ab-92ed27ec7148
Homo sapiens
90'408 cells h5ad
334 MB
 Not in ASAP Details
cellxgene
sc
Pvalb - MTG: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
d87f3f91-dca4-494b-8993-c4e3008a8fa5
Homo sapiens
90'804 cells x 35'483 genes h5ad
2.15 GB
 Not in ASAP Details
cellxgene
sc
Individual Single-Cell RNA-seq PBMC Data from Schulte-Schrepping et al. Publication DOI
5e717147-0f75-4de1-8bd2-6fda01b8d75f
Homo sapiens
90'957 cells x 32'406 genes h5ad
685 MB
 Not in ASAP Details
hca
sc
Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment Publication DOI
cd9d6360-ce38-4321-97df-f13c79e3cb84::e6a28d7d-107b-40c0-950b-10dd61b9456e
Homo sapiens
90'957 cells h5ad
689 MB
 Not in ASAP Details
matkp
sc
Single cell atlas of mouse inguinal adipose tissue (single-nucleus), 2022 (su... Publication DOI
SingleCell_Emont2022_Mouse_SCP1376_SN_ING
Mus musculus
91'252 cells zip
530 MB
 Not in ASAP Details
cellxgene
sc
Human Non-DA Neurons 10x scRNA-seq Publication DOI
251b1a7e-d050-4486-8d50-4c2619eb0f46
Homo sapiens
91'479 cells x 33'295 genes h5ad
1.11 GB
 Not in ASAP Details
cellxgene
sc
Supercluster: Microglia Publication DOI
700aed19-c16e-4ba8-9191-07da098a8626
Homo sapiens
91'838 cells x 58'232 genes h5ad
335 MB
 Not in ASAP Details
cellxgene
sc
Single nucleus transcriptomic atlas of human foetal tendon Publication DOI
f641d68a-e877-4bb8-afd7-b8fa3921d461
Homo sapiens
91'859 cells x 35'477 genes h5ad
762 MB
 Not in ASAP Details
cellxgene
sc
Single cell RNA sequencing of bone marrow mononuclear cells from healthy dono... Publication DOI
965386e9-1e4f-466d-bf59-ebdca4b66b9b
Homo sapiens
92'676 cells x 26'343 genes h5ad
651 MB
 Not in ASAP Details
cellxgene
sc
Supercluster: Deep layer (non-IT) excitatory neurons Publication DOI
d01c9dff-abd1-4825-bf30-2eb2ba74597e
Homo sapiens
92'969 cells x 29'257 genes h5ad
2.43 GB
 Not in ASAP Details
cellxgene
sc
cbm.all Publication DOI
b11b95eb-750b-41f5-b9d0-77d155761bf3
Callithrix jacchus
92'981 cells x 13'246 genes h5ad
916 MB
 Not in ASAP Details
cellxgene
sc
Programmed cycle-induced endometrial perturbations do not independently influ... Publication DOI
fb90c70d-5917-4d03-920b-c78b230b51e5
Homo sapiens
93'064 cells x 17'679 genes h5ad
722 MB
 Not in ASAP Details
cellxgene
sc
NonImmune HNSCC Atlas
624d92e2-d006-4241-9fd8-03535f850301
Homo sapiens
93'431 cells x 23'767 genes h5ad
3.11 GB
 Not in ASAP Details
ebi_sc
sc
Immune cell profiling of COVID-19 patients in the recovery stage by single-ce... Publication DOI
E-CURD-55
Homo sapiens
93'556 cells h5ad
2.1 GB
 Not in ASAP Details
cellxgene
sc
Major cell cluster: Eye and other Publication DOI
842dd04e-5907-4da0-84af-90279bbf0902
Mus musculus
93'695 cells x 45'525 genes h5ad
797 MB
 Not in ASAP Details
cellxgene
sc
Visium spatial - OCT Publication DOI
5a4ba05e-6bd0-4cc1-927d-94b397587f4c
Homo sapiens
93'788 cells x 32'383 genes h5ad
428 MB
 Not in ASAP Details
cellxgene
sc
Single-cell census of murine glioblastoma subtypes Publication DOI
e056b20b-bb29-40c8-afd4-03124cf828a8
Mus musculus
94'181 cells x 31'671 genes h5ad
1.11 GB
 Not in ASAP Details
cellxgene
sc
scRNA-seq for GZMK+CD8+ T cells Target A Specific Acinar Cell Type in Sjögren... Publication DOI
df1edb87-e512-43ae-b5f4-cb179cfc2bb4
Homo sapiens
94'227 cells x 31'969 genes h5ad
418 MB
 Not in ASAP Details
cellxgene
sc
Excitatory neurons integrated with 10X sequencing MOp data Publication DOI
cb5efdb0-f91c-4cbd-9ad4-9d4fa41c572d
Mus musculus
94'243 cells x 26'944 genes h5ad
938 MB
 Not in ASAP Details
cellxgene
sc
Spleen Publication DOI
644a578d-ffdc-446b-9679-e7ab4c919c13
Homo sapiens
94'256 cells x 21'947 genes h5ad
415 MB
 Not in ASAP Details
cellxgene
sc
Tabula Sapiens - Fat Publication DOI
5e5e7a2f-8f1c-42ac-90dc-b4f80f38e84c
Homo sapiens
94'415 cells x 60'606 genes h5ad
3.44 GB
 Not in ASAP Details
cellxgene
sc
Healthy - Mesenchymal (second trimester) Publication DOI
cbd3d76b-eec6-42e5-a8fb-71dc825e2a74
Homo sapiens
94'952 cells x 35'461 genes h5ad
742 MB
 Not in ASAP Details
of 674