External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Dissection: Cerebral cortex (Cx) - Middle Temporal Gyrus - MTG Publication DOI
e1f595f6-ba2c-495e-9bee-7056f116b1e4
Homo sapiens
107'301 cells x 58'232 genes h5ad
1.23 GB
 Not in ASAP Details
cellxgene
sc
Single-cell RNA-seq of the Adult Human Kidney (Version 1.0) Publication DOI
32b9bdce-2481-4c85-ba1b-6ad5fcea844c
Homo sapiens
107'344 cells x 26'837 genes h5ad
2.04 GB
 Not in ASAP Details
hca
sc
Concerted changes in the pediatric single-cell intestinal ecosystem before an... Publication DOI
474a4229-840e-4d63-82af-8d3aa615ee17::9ddb9b62-4779-4163-bd04-932425ae9143
Homo sapiens
107'432 cells mtx
2.12 GB
 Not in ASAP Details
cellxgene
sc
Healthy - Oesophagus Publication DOI
27159c75-90c9-4c5d-a4d7-b61fc296dff6
Homo sapiens
107'495 cells x 35'461 genes h5ad
1.11 GB
 Not in ASAP Details
cellxgene
sc
Single-nucleus RNA sequencing of M2: T3 vs control Publication DOI
12990215-ad1a-4106-8536-7388327a616f
Mus musculus
107'742 cells x 21'486 genes h5ad
1.79 GB
 Not in ASAP Details
ebi_sc
sc
A Cellular Atlas of Pitx2-Dependent Cardiac Development Publication DOI
E-HCAD-17
Mus musculus
108'292 cells h5ad
4 GB
 Not in ASAP Details
cellxgene
sc
Human dermal fibroblast atlas Publication DOI
a19d1667-a7b5-4556-9e5f-f9bfa690c0f1
Homo sapiens
108'440 cells x 25'952 genes h5ad
1.71 GB
 Not in ASAP Details
cellxgene
sc
scRNA-seq of lung biopsies from six human lung transplant cases Publication DOI
429d21fd-bb9a-4abf-922b-c15138524bdd
Homo sapiens
108'613 cells x 28'055 genes h5ad
1.05 GB
 Not in ASAP Details
cellxgene
sc
Major cell cluster: Primitive erythroid Publication DOI
a83d919c-87ac-4fe8-a655-71180168ec68
Mus musculus
108'613 cells x 45'525 genes h5ad
855 MB
 Not in ASAP Details
cellxgene
sc
Single-cell RNA-seq analysis reveals cell subsets and gene signatures associa... Publication DOI
d18736c3-6292-4379-919a-d6d973204c87
Homo sapiens
108'717 cells x 21'648 genes h5ad
248 MB
 Not in ASAP Details
cellxgene
sc
Human Fetal Retina Atlas Publication DOI
aecc2743-4ff2-4b55-ac8c-a1ff76fc4bb4
Homo sapiens
108'838 cells x 32'055 genes h5ad
693 MB
 Not in ASAP Details
cellxgene
sc
Supercluster: Non-neuronal cells Publication DOI
5346f9c6-755e-4336-94cc-38706ec00c2f
Homo sapiens
108'940 cells x 29'240 genes h5ad
927 MB
 Not in ASAP Details
cellxgene
sc
Human lymph node slices cultured with and without ex vivo stimulation by lipo... Publication DOI
e7bd68ab-df49-44df-9b1e-8486114aeeb5
Homo sapiens
109'297 cells x 35'477 genes h5ad
1.27 GB
 Not in ASAP Details
cellxgene
sc
Supercluster: Amygdala excitatory Publication DOI
c202b243-1aa1-4b16-bc9a-b36241f3b1e3
Homo sapiens
109'452 cells x 58'232 genes h5ad
1.61 GB
 Not in ASAP Details
cellxgene
sc
T Cell and NK Cell Subtypes of COVID-19 Immune Altas: Integration of 5 public... Publication DOI
bc2a7b3d-f04e-477e-96c9-9d5367d5425c
Homo sapiens
109'995 cells x 23'337 genes h5ad
743 MB
 Not in ASAP Details
cellxgene
sc
ClassNeuronalIPC Publication DOI
48c4a72a-bc2a-4d7c-9146-a7c2ab1d7d9f
Homo sapiens
110'260 cells x 58'226 genes h5ad
800 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Angular gyrus (AnG) Publication DOI
f5b0810c-1664-4a62-ad06-be1d9964aa8b
Homo sapiens
110'752 cells x 20'909 genes h5ad
2.51 GB
 Not in ASAP Details
cellxgene
sc
All - A single-cell transcriptomic atlas characterizes ageing tissues in the ... Publication DOI
98e5ea9f-16d6-47ec-a529-686e76515e39
Mus musculus
110'824 cells x 21'025 genes h5ad
2.37 GB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq of the human fetal lateral ganglionic eminence at 7, 9 an... Publication DOI
E-MTAB-8894
Homo sapiens
110'882 cells h5ad
3 GB
 Not in ASAP Details
cellxgene
sc
Oligodendrocyte - MTG: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
d2fc9880-e6d3-4922-af5c-61f4f517adfa
Homo sapiens
111'194 cells x 35'483 genes h5ad
1.33 GB
 Not in ASAP Details
broad_scp
sc
A unified rodent atlas reveals the cellular complexity and evolutionary diver...
SCP2773
Mus musculus
111'907 cells x 41'888 genes h5ad
6.02 GB
 Not in ASAP Details
ebi_sc
sc
Single-cell sequencing of epicardial cells and fibroblasts within the infarct... Publication DOI
E-MTAB-10035
Mus musculus
112'676 cells h5ad
4.5 GB
 Not in ASAP Details
cellxgene
sc
Frontal cortex samples from C9-FTD and age matched control brains Publication DOI
3b8b5de4-3aa1-4ac6-8890-8d03c8219981
Homo sapiens
113'106 cells x 33'067 genes h5ad
1.85 GB
 Not in ASAP Details
cellxgene
sc
scRNA-seq of vascular tissue Publication DOI
43245158-5ae1-4e71-a9a6-67eef49c26bc
Homo sapiens
113'304 cells x 32'397 genes h5ad
1.71 GB
 Not in ASAP Details
cellxgene
sc
Dissection: Dorsolateral prefrontal cortex (DFC) Publication DOI
716a4acc-919e-4326-9672-ebe06ede84e6
Homo sapiens
113'339 cells x 28'586 genes h5ad
2.51 GB
 Not in ASAP Details
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