External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
hca
sc
A molecular cell atlas of the human lung from single-cell RNA sequencing Publication DOI
6936da41-3692-46bb-bca1-cd0f507991e9::9d0b4b9f-cd34-4210-86e3-40b29dfbb225
Homo sapiens
737'280 cells mtx
95.8 MB
 Not in ASAP Details
hca
sc
A molecular cell atlas of the human lung from single-cell RNA sequencing Publication DOI
6936da41-3692-46bb-bca1-cd0f507991e9::5cc75771-da3f-4c22-9054-32e3a06e1d96
Homo sapiens
737'280 cells mtx
96.6 MB
 Not in ASAP Details
hca
sc
A molecular cell atlas of the human lung from single-cell RNA sequencing Publication DOI
6936da41-3692-46bb-bca1-cd0f507991e9::5f86559e-9b67-4410-8fff-6f31f7fa21df
Homo sapiens
737'280 cells mtx
105 MB
 Not in ASAP Details
hca
sc
A molecular cell atlas of the human lung from single-cell RNA sequencing Publication DOI
6936da41-3692-46bb-bca1-cd0f507991e9::c2cf75e4-961a-453c-8174-a1b5797a0cd8
Homo sapiens
737'280 cells mtx
112 MB
 Not in ASAP Details
hca
sc
A molecular cell atlas of the human lung from single-cell RNA sequencing Publication DOI
6936da41-3692-46bb-bca1-cd0f507991e9::48a29813-ab2d-4241-a72e-89ad230a07e9
Homo sapiens
737'280 cells mtx
116 MB
 Not in ASAP Details
hca
sc
A molecular cell atlas of the human lung from single-cell RNA sequencing Publication DOI
6936da41-3692-46bb-bca1-cd0f507991e9::7047b4b4-1178-4335-9fdb-2649eaa2eaa0
Homo sapiens
737'280 cells mtx
126 MB
 Not in ASAP Details
hca
sc
A molecular cell atlas of the human lung from single-cell RNA sequencing Publication DOI
6936da41-3692-46bb-bca1-cd0f507991e9::5a9dc78d-73d2-4b73-99a3-cde09e08fcdb
Homo sapiens
737'280 cells mtx
144 MB
 Not in ASAP Details
hca
sc
A molecular cell atlas of the human lung from single-cell RNA sequencing Publication DOI
6936da41-3692-46bb-bca1-cd0f507991e9::529cbbf4-72f8-434d-aca0-30d2a5e85315
Homo sapiens
737'280 cells mtx
163 MB
 Not in ASAP Details
hca
sc
A molecular cell atlas of the human lung from single-cell RNA sequencing Publication DOI
6936da41-3692-46bb-bca1-cd0f507991e9::9b61ddee-9947-45e2-aa6b-153c470b3716
Homo sapiens
737'280 cells mtx
171 MB
 Not in ASAP Details
hca
sc
A molecular cell atlas of the human lung from single-cell RNA sequencing Publication DOI
6936da41-3692-46bb-bca1-cd0f507991e9::65ff3783-9a19-49f7-8ccc-fb343fd07ffa
Homo sapiens
737'280 cells mtx
182 MB
 Not in ASAP Details
hca
sc
A molecular cell atlas of the human lung from single-cell RNA sequencing Publication DOI
6936da41-3692-46bb-bca1-cd0f507991e9::e9f6b205-648c-471f-aafa-b259a21a1e2a
Homo sapiens
737'280 cells mtx
187 MB
 Not in ASAP Details
hca
sc
A molecular cell atlas of the human lung from single-cell RNA sequencing Publication DOI
6936da41-3692-46bb-bca1-cd0f507991e9::a67f7455-2ca3-4a80-a56f-e28e3f18c62c
Homo sapiens
737'280 cells mtx
200 MB
 Not in ASAP Details
hca
sc
Transcriptional changes in the mammary gland during lactation revealed by sin... Publication DOI
e956e66a-ac8e-483a-963a-0f92c7e5abfb::feba8bc5-d9f7-43d0-ab40-adbb9f96ada1
Homo sapiens
737'280 cells mtx
209 MB
 Not in ASAP Details
hca
sc
Transcriptional changes in the mammary gland during lactation revealed by sin... Publication DOI
e956e66a-ac8e-483a-963a-0f92c7e5abfb::d7e2c9b3-934b-42af-8cff-f3a2be94c8fe
Homo sapiens
737'280 cells mtx
214 MB
 Not in ASAP Details
hca
sc
A molecular cell atlas of the human lung from single-cell RNA sequencing Publication DOI
6936da41-3692-46bb-bca1-cd0f507991e9::1407db11-4d6b-401b-bc11-e285bea5af77
Homo sapiens
737'280 cells mtx
225 MB
 Not in ASAP Details
hca
sc
A molecular cell atlas of the human lung from single-cell RNA sequencing Publication DOI
6936da41-3692-46bb-bca1-cd0f507991e9::62abd65a-1512-410e-aa9d-c03e0ca5682f
Homo sapiens
737'280 cells mtx
233 MB
 Not in ASAP Details
hca
sc
Transcriptional changes in the mammary gland during lactation revealed by sin... Publication DOI
e956e66a-ac8e-483a-963a-0f92c7e5abfb::054cdb71-ef90-4cbf-bd9e-91b023743634
Homo sapiens
737'280 cells mtx
254 MB
 Not in ASAP Details
hca
sc
Transcriptional changes in the mammary gland during lactation revealed by sin... Publication DOI
e956e66a-ac8e-483a-963a-0f92c7e5abfb::815b348a-333c-4a3e-9c51-35f79efbed06
Homo sapiens
737'280 cells mtx
256 MB
 Not in ASAP Details
hca
sc
A molecular cell atlas of the human lung from single-cell RNA sequencing Publication DOI
6936da41-3692-46bb-bca1-cd0f507991e9::b56f6fa5-d8e9-4009-9e4b-50dbf6cccf49
Homo sapiens
737'280 cells mtx
263 MB
 Not in ASAP Details
cellxgene
sc
Human Immune Health Atlas CD4 T cells Publication DOI
e12eb8a9-5e8b-4b59-90c8-77d29a811c00
Homo sapiens
743'615 cells x 32'357 genes h5ad
5.24 GB
 Not in ASAP Details
cellxgene
sc
All Cells Publication DOI
4568ebb2-468c-4381-9ce7-81cd97abcd22
Homo sapiens
748'679 cells x 21'588 genes h5ad
5.96 GB
 Not in ASAP Details
broad_scp
sc
A transcriptomic atlas of the mouse cerebellum
SCP795
Homo sapiens
766'811 cells x 24'458 genes rds
828 MB
 Not in ASAP Details
cellxgene
sc
Naive CD4 T cells Publication DOI
6cd95660-6751-4629-a2ef-fbf5985531a5
Homo sapiens
770'809 cells x 18'063 genes h5ad
8.12 GB
 Not in ASAP Details
hca
sc
Single-cell multi-omics analysis of the immune response in COVID-19 Publication DOI
b963bd4b-4bc1-4404-8425-69d74bc636b8::8ac9174c-f4ca-4fc8-8de1-dcc3542bb982
Homo sapiens
800'000 cells h5ad
2.78 GB
 Not in ASAP Details
cellxgene
sc
HBCA - global Publication DOI
0ba636a1-4754-4786-a8be-7ab3cf760fd6
Homo sapiens
803'283 cells x 33'604 genes h5ad
7.76 GB
 Not in ASAP Details
of 674