External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 18884 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
E8.5_rep1: 201104_09 Publication DOI
550a45c4-b46e-47ec-90ac-db12fdaa2e4f
Mus musculus
7'233 cells x 27'368 genes h5ad
46 MB
 Not in ASAP Details
cellxgene
sc
Bladder Publication DOI
bdf0abdf-f1a5-4480-a30b-1e34eaee53bb
Microcebus murinus
7'244 cells x 16'400 genes h5ad
57.9 MB
 Details
cellxgene
sc
Brain non-myeloid cells - A single-cell transcriptomic atlas characterizes ag... Publication DOI
66ff82b4-9380-469c-bc4b-cfa08eacd325
Mus musculus
7'249 cells x 21'025 genes h5ad
161 MB
 Not in ASAP Details
broad_scp
sc
Transcriptomic landscape of the blastema niche in regenerating adult axolotl ... Publication DOI
SCP489
 7'270 cells x 96'017 genes counts_table
130 MB
 Not in ASAP Details
cellxgene
sc
Platelet sub_clusters of COVID-19 Immune Altas: Integration of 5 public COVID... Publication DOI
e763ed0d-0e5a-4b8e-9514-6da3d9e47956
Homo sapiens
7'274 cells x 23'337 genes h5ad
23.4 MB
 Not in ASAP Details
cellxgene
sc
Tabula Sapiens - Germline Publication DOI
b806712d-18b0-454c-a0fe-9909159e07c7
Homo sapiens
7'276 cells x 60'606 genes h5ad
363 MB
 Not in ASAP Details
ebi_sc
sc
Single cell transcriptional profile of third instar larval wing discs in Dros... Publication DOI
E-MTAB-9444
Drosophila melanogaster
7'278 cells h5ad
80 MB
 Not in ASAP Details
cellxgene
sc
Ovarian tissue from donor 4 Publication DOI
2a65bd41-4a3f-42f4-98b2-c53962811152
Homo sapiens
7'288 cells x 35'477 genes h5ad
84.9 MB
 Not in ASAP Details
ebi_sc
sc
Single cell transcriptional profiling of aortic endothelium identifies a hier...
E-MTAB-7149
Mus musculus
7'293 cells h5ad
110 MB
 Not in ASAP Details
cellxgene
sc
Liver - A single-cell transcriptomic atlas characterizes ageing tissues in th... Publication DOI
6202a243-b713-4e12-9ced-c387f8483dea
Mus musculus
7'294 cells x 17'943 genes h5ad
128 MB
 Not in ASAP Details
cellxgene
sc
E9.0: Puck_220718_33 Publication DOI
df780eb5-2115-4b46-b322-d290fef136d6
Mus musculus
7'299 cells x 27'368 genes h5ad
29.2 MB
 Not in ASAP Details
cellxgene
sc
Aging mouse ovary: Stromal cells Publication DOI
7e1fbe6b-1a4a-4c4d-a786-313049f97c69
Mus musculus
7'308 cells x 20'053 genes h5ad
319 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_230913_07' Publication DOI
460ff9e9-8b2a-4036-b14f-399462dbda77
Mus musculus
7'327 cells x 29'286 genes h5ad
16.3 MB
 Not in ASAP Details
cellxgene
sc
E8.5_rep1: 201104_14 Publication DOI
24bf23c1-9922-449f-99ae-1e6361560f2d
Mus musculus
7'334 cells x 27'368 genes h5ad
57.9 MB
 Not in ASAP Details
cellxgene
sc
Horizontal cells in human retina Publication DOI
11ef37ee-2173-458e-aab8-7fe35da8e47b
Homo sapiens
7'348 cells x 30'172 genes h5ad
397 MB
 Not in ASAP Details
cellxgene
sc
Vascular_endothelial
5263b821-82f6-4344-acf7-a3821ef0c1bf
Homo sapiens
7'358 cells x 32'397 genes h5ad
78.2 MB
 Not in ASAP Details
cellxgene
sc
E9.0: Puck_220718_29 Publication DOI
e6e8a767-b862-4006-a393-67719c3082b3
Mus musculus
7'389 cells x 27'368 genes h5ad
28.1 MB
 Not in ASAP Details
cellxgene
sc
scRNA-seq of adult gamma delta T cells Publication DOI
5f4556b6-017e-49b3-b31c-c6e8e226c9fb
Homo sapiens
7'417 cells x 35'477 genes h5ad
68.9 MB
 Not in ASAP Details
hca
sc
Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. Publication DOI
b91c623b-1945-4727-b167-0a93027b0d3f::04bc35da-999d-4fe1-954c-a8e28102d56c
Homo sapiens
7'435 cells h5
23.2 MB
 Not in ASAP Details
broad_scp
sc
Single cell T1D - time (6w, 10w, 18w)
SCP77
 7'438 cells x 17'188 genes counts_table
128 MB
 Not in ASAP Details
ebi_sc
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
E-MTAB-6678
Homo sapiens
7'468 cells h5ad
578 MB
 Not in ASAP Details
cellxgene
sc
Single-cell RNA-seq of normal human hearts (PMID: 31915373) Publication DOI
07e6773a-6c01-47aa-ac14-fbc1965edf33
Homo sapiens
7'495 cells x 51'474 genes h5ad
100 MB
 Not in ASAP Details
cellxgene
sc
HTAPP-982-SMP-7629 scRNA-seq Publication DOI
a6c0143c-11f7-4a54-8710-6b427b78873a
Homo sapiens
7'505 cells x 20'882 genes h5ad
106 MB
 Not in ASAP Details
cellxgene
sc
Molecular characterization of selectively vulnerable neurons in Alzheimer’s D... Publication DOI
1492eb6b-7d50-4c4d-94ac-c801a7d5555c
Homo sapiens
7'506 cells x 31'997 genes h5ad
32.6 MB
 Not in ASAP Details
ebi_sc
sc
Liquid Biopsy-Based Single-Cell Transcriptome Profiling Characterizes Heterog... Publication DOI
E-MTAB-8530
Homo sapiens
7'511 cells h5ad
417 MB
 Not in ASAP Details
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