External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 18884 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
DCM/ACM heart cell atlas: Neuronal cells Publication DOI
83b5e943-a1d5-4164-b3f2-f7a37f01b524
Homo sapiens
7'999 cells x 3'833 genes h5ad
136 MB
 Not in ASAP Details
cellxgene
sc
Mesenchymal cells Publication DOI
d224c8e0-c28e-4360-9e42-b3977cd83f9f
Homo sapiens
8'030 cells x 24'540 genes h5ad
317 MB
 Not in ASAP Details
cellxgene
sc
Supercluster: Bergmann glia Publication DOI
50dc91a1-36b6-472a-b884-7307b6961ab1
Homo sapiens
8'041 cells x 58'232 genes h5ad
53.1 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_230810_11' Publication DOI
dbee77b2-4837-49db-9426-fbe03cea93cd
Mus musculus
8'043 cells x 29'286 genes h5ad
20.2 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Body of hippocampus (HiB) - Rostral CA3 Publication DOI
d5452b83-7c3d-4d7c-ab7a-c7fece7196c5
Homo sapiens
8'077 cells x 58'232 genes h5ad
106 MB
 Not in ASAP Details
cellxgene
sc
HTAPP-982-SMP-7629 Slide-seq Publication DOI
1637e817-d091-4793-a3af-796ef57e2668
Homo sapiens
8'086 cells x 15'885 genes h5ad
25.5 MB
 Not in ASAP Details
cellxgene
sc
Lamp5 - neocortex: Human variation study (HVS) Publication DOI
d5a2d011-3765-4dad-ac36-3fff087589fe
Homo sapiens
8'093 cells x 18'736 genes h5ad
695 MB
 Not in ASAP Details
cellxgene
sc
ClassImmune Publication DOI
ea7b95cf-1967-4431-9ee8-ec85ff793360
Homo sapiens
8'102 cells x 58'226 genes h5ad
67.3 MB
 Not in ASAP Details
cellxgene
sc
SMBO-109 Publication DOI
024581e3-5375-4e33-8060-d8448694f556
Homo sapiens
8'156 cells x 14'731 genes h5ad
98.8 MB
 Not in ASAP Details
cellxgene
sc
Evolution of cellular diversity in primary motor cortex of marmoset - excitat... Publication DOI
63d02cfd-0580-415d-8b34-ff4839af89e3
Callithrix jacchus
8'166 cells x 14'409 genes h5ad
71.4 MB
 Not in ASAP Details
cellxgene
sc
Molecular characterization of selectively vulnerable neurons in Alzheimer’s D... Publication DOI
f9ad5649-f372-43e1-a3a8-423383e5a8a2
Homo sapiens
8'168 cells x 31'997 genes h5ad
16.5 MB
 Not in ASAP Details
hca
sc
High-Resolution Transcriptomic Landscape of the Human Submandibular Gland. Publication DOI
ccc3b786-1da0-427f-a45f-76306d6143b6::4d17ab1b-de88-4cc1-878e-b9540c8ee21e
Homo sapiens
8'168 cells h5
18.3 MB
 Not in ASAP Details
cellxgene
sc
Pancreas Publication DOI
555bce6a-563b-4b9b-b496-3dbff30e756b
Microcebus murinus
8'172 cells x 16'400 genes h5ad
64.7 MB
 Details
cellxgene
sc
Non-neuronal cells of human eye Publication DOI
ab5b2256-b209-48b5-a801-c5d9a8c0de56
Homo sapiens
8'193 cells x 56'710 genes h5ad
82.3 MB
 Not in ASAP Details
cellxgene
sc
L6b - neocortex: Human variation study (HVS) Publication DOI
a30db232-08a6-48f0-ab9f-ad6977b8a6b1
Homo sapiens
8'213 cells x 18'736 genes h5ad
767 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA-seq of metabolite specific T-cells (MR1-restricted) from adul... Publication DOI
E-MTAB-7704
Mus musculus
8'223 cells h5ad
203 MB
 Not in ASAP Details
cellxgene
sc
Evolution of cellular diversity in primary motor cortex of mouse - excitory n... Publication DOI
6acb6637-ac08-4a65-b2d1-581e51dc7ccf
Mus musculus
8'242 cells x 30'146 genes h5ad
103 MB
 Not in ASAP Details
cellxgene
sc
Healthy - Salivary gland Publication DOI
8b47073c-8a20-4a37-b234-e1889b43991b
Homo sapiens
8'263 cells x 35'461 genes h5ad
96.4 MB
 Not in ASAP Details
broad_scp
sc
An immune-cell signature of bacterial sepsis (Bone Marrow Stimulation)
SCP550
 8'270 cells x 33'538 genes counts_table
51.6 MB
 Not in ASAP Details
broad_scp
sc
Induction of a regulatory myeloid program in bacterial sepsis and severe COVI...
SCP1322
Homo sapiens
8'279 cells x 33'538 genes counts_table
40.4 MB
 Not in ASAP Details
hca
sc
Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. Publication DOI
b91c623b-1945-4727-b167-0a93027b0d3f::20efcdd4-a9f5-4ec6-8f6e-83aaddc00ad7
Homo sapiens
8'281 cells h5
18.3 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA sequencing of chronic myelomonocytic leukemia stem cell Publication DOI
E-MTAB-8884
Homo sapiens
8'281 cells h5ad
290 MB
 Not in ASAP Details
cellxgene
sc
Large intestine - A single-cell transcriptomic atlas characterizes ageing tis... Publication DOI
2491629a-bde0-46ad-a073-e34fcb516857
Mus musculus
8'311 cells x 21'025 genes h5ad
254 MB
 Not in ASAP Details
cellxgene
sc
Fetal kidney dataset: stroma Publication DOI
c52de62a-058d-4d78-a464-bdf552378f43
Homo sapiens
8'345 cells x 32'088 genes h5ad
104 MB
 Not in ASAP Details
cellxgene
sc
Molecular characterization of selectively vulnerable neurons in Alzheimer’s D... Publication DOI
cd77258f-b08b-4c89-b93f-6e6f146b1a4d
Homo sapiens
8'362 cells x 31'997 genes h5ad
43.9 MB
 Not in ASAP Details
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