External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
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Source Dataset Matrix Format ASAP Actions
cellxgene
sc
e14.5 glutamatergic lineage Publication DOI
8d8411b2-eb8c-4d8b-9cf1-c605de44d1e6
Mus musculus
8'863 cells x 30'198 genes h5ad
113 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_230807_04' Publication DOI
77230e22-f723-40f8-a16d-278671d90f55
Mus musculus
8'899 cells x 29'286 genes h5ad
33.3 MB
 Not in ASAP Details
cellxgene
sc
Bladder lumen - A single-cell transcriptomic atlas characterizes ageing tissu... Publication DOI
93966790-bbfa-420f-aa85-bc5ca51d9c96
Mus musculus
8'945 cells x 17'943 genes h5ad
181 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA-seq of human RPE1-MYCN-ER cells with treatment of EtOH (0h) o... Publication DOI
E-MTAB-9689
Homo sapiens
8'951 cells h5ad
255 MB
 Not in ASAP Details
cellxgene
sc
ClassErythrocyte Publication DOI
8775a6c6-b960-43ae-9f76-45c4acda3621
Homo sapiens
8'959 cells x 58'226 genes h5ad
24.4 MB
 Not in ASAP Details
hca
sc
Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19 Publication DOI
08fb10df-32e5-456c-9882-e33fcd49077a::427d7360-27c5-403b-b5af-18c982145b95
Homo sapiens
8'972 cells h5
25.5 MB
 Not in ASAP Details
cellxgene
sc
Human Fetal Bone Marrow (CITE-seq) Publication DOI
343ff97c-85df-494b-8400-beb937618611
Homo sapiens
8'978 cells x 35'469 genes h5ad
162 MB
 Not in ASAP Details
cellxgene
sc
scRNA-seq data - lymphatic cells Publication DOI
a41202e6-173c-477c-8b4d-e0688ee1c4cb
Homo sapiens
8'982 cells x 32'383 genes h5ad
77.6 MB
 Not in ASAP Details
cellxgene
sc
UMAP of Plasma and B-Cells cells Publication DOI
03d5794d-cde9-4769-a1a9-b3899d2b1d87
Homo sapiens
9'015 cells x 32'383 genes h5ad
43.5 MB
 Not in ASAP Details
cellxgene
sc
Photoreceptor cells of the human fovea and peripheral retina Publication DOI
7b75b2c4-6d99-40be-9a61-391455d859e6
Homo sapiens
9'070 cells x 32'040 genes h5ad
55.6 MB
 Not in ASAP Details
ebi_sc
sc
A single cell view of the transcriptome during lateral root initiation of Ara... Publication DOI
E-GEOD-158761
Arabidopsis thaliana
9'090 cells h5ad
168 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell transcriptomic analysis of rice root tips – Oryza sativa Indica G... Publication DOI
E-CURD-82
Oryza sativa Indica Group
9'093 cells h5ad
131 MB
 Not in ASAP Details
cellxgene
sc
Epithelium (no cilium) Publication DOI
e8a11a27-9c47-4673-b65d-11b9cd6065e1
Homo sapiens
9'096 cells x 22'385 genes h5ad
165 MB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the pronephros Publication DOI
54da2ee9-19f8-4e84-bf9f-5c763e6705a0
Danio rerio
9'110 cells x 32'031 genes h5ad
13 MB
 Not in ASAP Details
cellxgene
sc
Supercluster: Fibroblast Publication DOI
531c9543-9093-45ed-93ac-ebc5815bfb8a
Homo sapiens
9'156 cells x 58'232 genes h5ad
47.4 MB
 Not in ASAP Details
cellxgene
sc
Pax6 - MTG: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
f67f2cfa-ba45-4f77-8e26-64a15f666043
Homo sapiens
9'203 cells x 35'483 genes h5ad
228 MB
 Not in ASAP Details
cellxgene
sc
Evolution of cellular diversity in primary motor cortex of mouse - inhibitory... Publication DOI
6b33f0b2-90b4-4882-9a92-5af518bea2f5
Mus musculus
9'249 cells x 30'146 genes h5ad
99.7 MB
 Not in ASAP Details
cellxgene
sc
Evolution of cellular diversity in primary motor cortex of marmoset - inhibit... Publication DOI
cb119d3c-07e4-48c5-8710-8e2f615a34ab
Callithrix jacchus
9'257 cells x 14'409 genes h5ad
66.3 MB
 Not in ASAP Details
cellxgene
sc
Palate Atlas Publication DOI
b4f2c50e-080f-4d37-aa21-911d2273b0da
Homo sapiens
9'263 cells x 35'377 genes h5ad
79.2 MB
 Not in ASAP Details
ebi_sc
sc
A single-cell survey of the human first-trimester placenta and decidua (Drop-... Publication DOI
E-HCAD-23
Homo sapiens
9'267 cells h5ad
202 MB
 Not in ASAP Details
cellxgene
sc
Thymus - A single-cell transcriptomic atlas characterizes ageing tissues in t... Publication DOI
6e4f871d-fd7c-4909-8c14-e4c9957c2e8f
Mus musculus
9'275 cells x 17'943 genes h5ad
125 MB
 Not in ASAP Details
broad_scp
sc
IFNb treatment: Single cell transcriptomics reveals opioid usage evokes wides...
SCP589
 9'278 cells x 21'271 genes counts_table
100 MB
 Not in ASAP Details
hca
sc
A single cell immune cell atlas of human hematopoietic system
cc95ff89-2e68-4a08-a234-480eca21ce79::23ef5529-20dc-45bc-a1c8-9d85ea523ab6
Homo sapiens
9'278 cells h5ad
66.6 MB
 Not in ASAP Details
cellxgene
sc
Neural
f43f70fc-0aa9-493e-8e5a-5649f090d433
Homo sapiens
9'286 cells x 32'397 genes h5ad
71 MB
 Not in ASAP Details
cellxgene
sc
49 years old male - Fresh PBMCs (3 days post-intubation) Publication DOI
eeacb0c1-2217-4cf6-b8ce-1f0fedf1b569
Homo sapiens
9'337 cells x 32'393 genes h5ad
120 MB
 Not in ASAP Details
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