External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 18884 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Spatial transcriptomics in mouse: Puck_200210_02 Publication DOI
60d25f3a-092a-4ea3-8e16-bd49c2846bbc
Mus musculus
11'005 cells x 20'615 genes h5ad
22 MB
 Not in ASAP Details
cellxgene
sc
Puck 'A0064_039' Publication DOI
4f3a25fa-a226-4c39-a41b-d2ff688c55d6
Mus musculus
11'028 cells x 29'286 genes h5ad
26.5 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_200131_13 Publication DOI
f37699b9-abcd-45e1-b8a9-fd406fe18c25
Mus musculus
11'031 cells x 21'067 genes h5ad
16.3 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell transcriptional analysis reveals ILC-like cells in zebrafish Publication DOI
E-MTAB-7159
Danio rerio
11'034 cells h5ad
130 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_240129_33' Publication DOI
7f556c49-713a-43ef-b9a7-04d77fbaae6b
Mus musculus
11'050 cells x 29'286 genes h5ad
29.2 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA-Seq of the murine non-myocyte cardiac cellulome Publication DOI
E-MTAB-6173
Mus musculus
11'057 cells h5ad
296 MB
 Not in ASAP Details
cellxgene
sc
HTAPP-917-SMP-4531 scRNA-seq Publication DOI
54d56674-e4e1-4e3c-9110-ea5cc2ac0eb5
Homo sapiens
11'074 cells x 19'353 genes h5ad
126 MB
 Not in ASAP Details
hca
sc
Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. Publication DOI
b91c623b-1945-4727-b167-0a93027b0d3f::632ed613-f32c-4d88-be46-701a897e5d20
Homo sapiens
11'074 cells h5
26.1 MB
 Not in ASAP Details
ebi_sc
sc
Single Cell Analysis of B cells in COVID-19 comprising active and recovered d... Publication DOI
E-MTAB-11011
Homo sapiens
11'084 cells h5ad
225 MB
 Not in ASAP Details
broad_scp
sc
liver Chromium single-cell RNA-seq Publication DOI
SCP2045
Mus musculus
11'085 cells x 19'355 genes rds
1.69 GB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the cranial sensory ganglia Publication DOI
3e60412c-4707-49e6-9135-dce1fb837b20
Danio rerio
11'094 cells x 32'031 genes h5ad
14.4 MB
 Not in ASAP Details
cellxgene
sc
intestine_on_chip_media Publication DOI
f7ca7eb9-0919-4eba-99a1-21ba382b4174
Homo sapiens
11'103 cells x 32'357 genes h5ad
262 MB
 Not in ASAP Details
hca
sc
Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19 Publication DOI
08fb10df-32e5-456c-9882-e33fcd49077a::64175096-e33e-49da-868e-7f989a5a9e52
Homo sapiens
11'115 cells h5
21.1 MB
 Not in ASAP Details
cellxgene
sc
Macrophage cells from human healthy donor liver samples Publication DOI
b550fd94-97e0-42e2-90f7-7434781ea2f8
Homo sapiens
11'127 cells x 32'596 genes h5ad
89.3 MB
 Not in ASAP Details
cellxgene
sc
Spleen Publication DOI
bf694f39-4342-4e75-aec0-d46db17f2036
Microcebus murinus
11'152 cells x 16'400 genes h5ad
71.6 MB
 Details
broad_scp
sc
HCA LungMAP COVID-19 Adipose
SCP865
 11'167 cells x 27 genes counts_table
99.9 KB
 Not in ASAP Details
cellxgene
sc
intestine_on_chip_IFN Publication DOI
51d9716c-50bb-4fd8-8d1e-7d9329969cb7
Homo sapiens
11'177 cells x 32'357 genes h5ad
263 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_230517_33' Publication DOI
be110542-629f-4a0b-9ead-2b4d78b58a46
Mus musculus
11'193 cells x 29'286 genes h5ad
37.5 MB
 Not in ASAP Details
hca
sc
Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. Publication DOI
b91c623b-1945-4727-b167-0a93027b0d3f::b278f673-1489-4e6f-9ad4-b3e8ddb6a687
Homo sapiens
11'201 cells h5
29.1 MB
 Not in ASAP Details
cellxgene
sc
DLPFC region Publication DOI
07dd8c34-4625-480a-8ee4-273a06c3082b
Homo sapiens
11'202 cells x 32'344 genes h5ad
110 MB
 Not in ASAP Details
ebi_sc
sc
Drop-seq analysis of bleomycin-treated and control mouse lung single-cell sus... Publication DOI
E-MTAB-7142
Mus musculus
11'213 cells h5ad
203 MB
 Not in ASAP Details
cellxgene
sc
scRNA-seq data analysis of endothelium-enriched mesenteric arterial tissues f... Publication DOI
42b6a476-c51d-4f8b-b68b-44941b3a11bf
Homo sapiens
11'243 cells x 32'383 genes h5ad
116 MB
 Not in ASAP Details
cellxgene
sc
OPC - neocortex: Human variation study (HVS) Publication DOI
31285bcd-9a28-48ce-8cc0-543af80261d3
Homo sapiens
11'244 cells x 18'736 genes h5ad
873 MB
 Not in ASAP Details
ebi_sc
sc
Transcriptomic analysis of REPTOR or FoxO increased activity in muscle tissue... Publication DOI
E-GEOD-227038
Drosophila melanogaster
11'257 cells h5ad
106 MB
 Not in ASAP Details
cellxgene
sc
snRNA-seq of human subcutaneous adipose tissue - adipocytes SCT normalization Publication DOI
ff995299-bf56-4d11-914d-b77949f02fb1
Homo sapiens
11'265 cells x 35'477 genes h5ad
164 MB
 Not in ASAP Details
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