External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
ebi_sc sc	Drosophila voltage-gated sodium channels are only expressed in active neurons... Publication DOI E-GEOD-157202 Drosophila melanogaster	13'210 cells	h5ad 214 MB	Not in ASAP	Details
broad_scp sc	DroNc-Seq: Single nucleus RNA-seq on mouse archived brain SCP60	13'313 cells x 17'308 genes	counts_table 120 MB	Not in ASAP	Details
broad_scp sc	ICA: Blood Mononuclear Cells (2 donors, 2 sites) SCP345	13'316 cells x 21'814 genes	counts_table 33.6 MB	Not in ASAP	Details
cellxgene sc	Fat Publication DOI 8f67108f-1f78-4148-a14a-bff85c58f19b Microcebus murinus	13'318 cells x 16'400 genes	h5ad 91.5 MB	ASAP118	Details
hca sc	Human distal lung maps and lineage hierarchies reveal a bipotent progenitor Publication DOI e5fe8274-3769-4d7d-aa35-6d33c226ab43::be52b04f-79d9-4b1a-b44b-b99248ea0545 Homo sapiens	13'330 cells	h5 38.9 MB	Not in ASAP	Details
cellxgene sc	Puck 'Puck_240108_33' Publication DOI e9f98f53-5954-4e13-b4ee-93ca8d27243c Mus musculus	13'372 cells x 29'286 genes	h5ad 45.4 MB	Not in ASAP	Details
ebi_sc sc	ScRNA-seq of dendritic cells from mouse lymph nodes Publication DOI E-MTAB-10196 Mus musculus	13'378 cells	h5ad 386 MB	Not in ASAP	Details
cellxgene sc	Dissection: Thalamus (THM) - medial nuclear complex of thalamus (MNC) - medio... Publication DOI b8681124-aabf-4904-b9c9-66d834bf5bba Homo sapiens	13'382 cells x 58'232 genes	h5ad 184 MB	Not in ASAP	Details
cellxgene sc	Brain myeloid cells - A single-cell transcriptomic atlas characterizes ageing... Publication DOI c08f8441-4a10-4748-872a-e70c0bcccdba Mus musculus	13'417 cells x 21'025 genes	h5ad 212 MB	Not in ASAP	Details
broad_scp sc	A single-cell atlas of de novo beta-cell regeneration reveals the contributio... Publication DOI SCP1549 Danio rerio	13'507 cells x 27'866 genes	rds 45.9 MB	Not in ASAP	Details
hca sc	Human distal lung maps and lineage hierarchies reveal a bipotent progenitor Publication DOI e5fe8274-3769-4d7d-aa35-6d33c226ab43::b42aa42d-3725-4223-ba62-3c6ebea7389c Homo sapiens	13'512 cells	h5 61.8 MB	Not in ASAP	Details
cellxgene sc	Adult ureter urothelial subset Publication DOI 5467c340-864c-4810-86ef-647039c07148 Homo sapiens	13'544 cells x 35'459 genes	h5ad 220 MB	Not in ASAP	Details
broad_scp sc	Single-cell RNA-seq of normal human fetal heart Publication DOI SCP1021	13'569 cells	counts_table 375 MB	Not in ASAP	Details
cellxgene sc	Amacrine cells of the human fovea and peripheral retina Publication DOI 5cdbb2ea-c622-466d-9ead-7884ad8cb99f Homo sapiens	13'607 cells x 32'040 genes	h5ad 117 MB	Not in ASAP	Details
cellxgene sc	Dissection: Myelencephalon (medulla oblongata) (Mo) - sensory relay nuclei in... Publication DOI 0ee5ae70-c3f5-473f-bd1c-287f4690ffc5 Homo sapiens	13'623 cells x 58'232 genes	h5ad 69.7 MB	Not in ASAP	Details
cellxgene sc	Hepatocyte-2 cells from human healthy donor liver samples Publication DOI 76af615b-12fe-4ebb-b8c6-239ad29e26e3 Homo sapiens	13'635 cells x 32'596 genes	h5ad 81.2 MB	Not in ASAP	Details
cellxgene sc	Epithelial and immune cells - Bronchoalveolar lavage from paediatric cystic f... Publication DOI 2dc198e1-e0a6-4e88-b7a3-4b66be7e4a4a Homo sapiens	13'687 cells x 20'794 genes	h5ad 103 MB	Not in ASAP	Details
cellxgene sc	Human OPC Cells 10x scRNA-seq Publication DOI 4dd1cd23-fc4d-4fd1-9709-602540f3ca6f Homo sapiens	13'691 cells x 33'295 genes	h5ad 102 MB	Not in ASAP	Details
ebi_sc sc	Single cell transcriptomes of developing chicken hind limbs at stages HH25, H... Publication DOI E-CURD-12 Gallus gallus	13'746 cells	h5ad 180 MB	Not in ASAP	Details
cellxgene sc	Spatial transcriptomics in the healthy human kidney: Puck_200113_09 Publication DOI a5a6c83a-3afe-4a87-8c32-691118c46e51 Homo sapiens	13'780 cells x 22'253 genes	h5ad 11.8 MB	Not in ASAP	Details
cellxgene sc	Spatial transcriptomics in the healthy human kidney: Puck_200205_18 Publication DOI cb97280b-1c7c-4c55-a921-481062abd9f7 Homo sapiens	13'782 cells x 21'897 genes	h5ad 20 MB	Not in ASAP	Details
broad_scp sc	Molecular organization of autonomic, respiratory, and spinally-projecting neu... SCP2659 Mus musculus	13'787 cells x 32'285 genes	rds 360 MB	Not in ASAP	Details
broad_scp sc	Single cell transcriptomics in caecum epithelial cells of suckling rabbits wi... SCP2662 Oryctolagus cuniculus	13'805 cells x 31'346 genes	counts_table 1.53 GB	Not in ASAP	Details
cellxgene sc	Spatial transcriptomics in mouse: Puck_191112_04 Publication DOI 72ed5f5b-e685-474d-b436-3bcc8c597e8e Mus musculus	13'822 cells x 20'644 genes	h5ad 8.37 MB	Not in ASAP	Details
cellxgene sc	progressive_plasticity_during_crc_metastasis_untreated_epithelial Publication DOI 4b5afdf9-9299-4655-9218-c9f67b3776e7 Homo sapiens	13'843 cells x 25'344 genes	h5ad 213 MB	Not in ASAP	Details