External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 18884 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Spatial transcriptomics in the healthy human kidney: Puck_200115_17 Publication DOI
d98ea49e-b70d-4434-b850-bbe217c9b66e
Homo sapiens
15'216 cells x 25'903 genes h5ad
26.9 MB
 Not in ASAP Details
cellxgene
sc
UMAP visualization of all 12 datasets Publication DOI
de94c504-4b58-4f42-b68d-74a8e4892f0e
Homo sapiens
15'243 cells x 30'172 genes h5ad
132 MB
 Not in ASAP Details
broad_scp
sc
Molecular organization of autonomic, respiratory, and spinally-projecting neu...
SCP2305
Mus musculus
15'342 cells x 32'285 genes rds
502 MB
 Not in ASAP Details
cellxgene
sc
Renal cell carcinoma, post aPD1, lung metastasis Puck_200727_10 Publication DOI
cc43509e-8729-4cbc-ace9-f0f7d654ee53
Homo sapiens
15'366 cells x 25'092 genes h5ad
17.7 MB
 Not in ASAP Details
cellxgene
sc
Major cell cluster: Ependymal cells Publication DOI
8bf44fc5-f1a0-419d-a71c-760fd9b813e8
Mus musculus
15'396 cells x 45'525 genes h5ad
223 MB
 Not in ASAP Details
cellxgene
sc
Chandelier - DLPFC: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
0374f03c-62e2-4859-8a14-acb00b0627d5
Homo sapiens
15'412 cells x 35'483 genes h5ad
492 MB
 Not in ASAP Details
cellxgene
sc
In vitro differentiation of mouse ependymal cells (DIV3), MCC lineage subset Publication DOI
72f84bfa-1d57-42bf-bea7-8472babb7ea0
Mus musculus
15'427 cells x 31'729 genes h5ad
315 MB
 Not in ASAP Details
cellxgene
sc
Stromal cells Publication DOI
f89af62b-4059-4fb9-8bc0-e8e189c4c340
Homo sapiens
15'438 cells x 38'361 genes h5ad
168 MB
 Not in ASAP Details
cellxgene
sc
E9.5: 201112_05 Publication DOI
3e65f4c0-8e2a-40ec-904f-c0e3bfef4cdd
Mus musculus
15'452 cells x 27'368 genes h5ad
126 MB
 Not in ASAP Details
cellxgene
sc
Single-cell transcriptomes of the human skin reveal age-related loss of fibro... Publication DOI
124744b8-4681-474a-9894-683896122708
Homo sapiens
15'457 cells x 30'172 genes h5ad
94.7 MB
 Not in ASAP Details
cellxgene
sc
snRNA-seq of human visceral adipose tissue - adipocytes Publication DOI
325044a1-4766-4104-8da9-abdfd1397e74
Homo sapiens
15'460 cells x 35'477 genes h5ad
168 MB
 Not in ASAP Details
cellxgene
sc
CD45 negative cells from human liver dataset Publication DOI
d1cbed97-d88f-4954-8925-13302fe30b39
Homo sapiens
15'481 cells x 30'172 genes h5ad
185 MB
 Not in ASAP Details
cellxgene
sc
blood and bone marrow from a healthy young donor Publication DOI
d3566d6a-a455-4a15-980f-45eb29114cab
Homo sapiens
15'502 cells x 460 genes h5ad
10.3 MB
 Not in ASAP Details
cellxgene
sc
T/NK cells - Bronchoalveolar lavage from paediatric cystic fibrosis (CF) and ... Publication DOI
6ba45a2b-0a29-454f-a580-41b0e540c06b
Homo sapiens
15'511 cells x 20'794 genes h5ad
76.5 MB
 Not in ASAP Details
cellxgene
sc
E9.5: 201104_31 Publication DOI
0e1e3573-d3b7-43f1-84a3-03067f1137aa
Mus musculus
15'516 cells x 27'368 genes h5ad
96.3 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA sequencing of developing maize ears facilitates functional an... Publication DOI
E-ENAD-51
Zea mays
15'516 cells h5ad
404 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_240129_26' Publication DOI
309b990b-9834-44ba-a4a2-a4dbbff8480c
Mus musculus
15'583 cells x 29'286 genes h5ad
27.3 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191109_10 Publication DOI
ce19be17-f066-452f-922e-b1f232ce8af5
Mus musculus
15'592 cells x 19'261 genes h5ad
6.96 MB
 Not in ASAP Details
cellxgene
sc
Microglia - 24 months old wild-type and Rag1-KO Publication DOI
a539c7af-fb65-44b1-8812-000b097eac99
Mus musculus
15'601 cells x 20'870 genes h5ad
167 MB
 Not in ASAP Details
cellxgene
sc
SACC region Publication DOI
a24ce10f-5a87-4e1f-a34a-f4fe5fc84052
Homo sapiens
15'669 cells x 32'344 genes h5ad
176 MB
 Not in ASAP Details
cellxgene
sc
High-Resolution Transcriptomic Landscape of the Human Submandibular Gland Publication DOI
4a90bbba-df97-4a28-83ae-7386fe7d9167
Homo sapiens
15'684 cells x 20'170 genes h5ad
79.9 MB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the endoderm Publication DOI
ab350c6a-41b6-4ba4-b9ff-20e39d7885a1
Danio rerio
15'703 cells x 32'031 genes h5ad
19.4 MB
 Not in ASAP Details
hca
sc
Human distal lung maps and lineage hierarchies reveal a bipotent progenitor Publication DOI
e5fe8274-3769-4d7d-aa35-6d33c226ab43::c768ec3e-89fc-44cb-8105-4602cb017947
Homo sapiens
15'713 cells h5
70.3 MB
 Not in ASAP Details
ebi_sc
sc
A single-cell survey of the human first-trimester placenta and decidua (10x) Publication DOI
E-HCAD-24
Homo sapiens
15'731 cells h5ad
474 MB
 Not in ASAP Details
cellxgene
sc
CGE-derived interneurons integrated with 10X sequencing MOp data Publication DOI
9bb9596d-f23f-4558-912f-d4dc7d52721b
Mus musculus
15'755 cells x 26'944 genes h5ad
132 MB
 Not in ASAP Details
of 756