External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 18884 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Molecular characterization of selectively vulnerable neurons in Alzheimer’s D... Publication DOI
24066994-8183-488d-b037-ef6bb524af39
Homo sapiens
15'772 cells x 31'997 genes h5ad
34.5 MB
 Not in ASAP Details
cellxgene
sc
Transcriptomic Analysis of Air-Liquid Interface Culture in Human Lung Organoi... Publication DOI
ef1a4b05-540c-4f73-8ceb-49dfa800645d
Homo sapiens
15'806 cells x 25'229 genes h5ad
608 MB
 Not in ASAP Details
cellxgene
sc
Molecular characterization of selectively vulnerable neurons in Alzheimer’s D... Publication DOI
873ff933-4fda-4936-9a70-67df11af90ac
Homo sapiens
15'833 cells x 31'997 genes h5ad
102 MB
 Not in ASAP Details
broad_scp
sc
Induction of a regulatory myeloid program in bacterial sepsis and severe COVI...
SCP1323
Homo sapiens
15'880 cells x 33'538 genes counts_table
71.3 MB
 Not in ASAP Details
cellxgene
sc
Bone Publication DOI
f760224a-fb9a-4dd2-9339-b72ee01e5825
Microcebus murinus
15'891 cells x 16'400 genes h5ad
137 MB
 Details
cellxgene
sc
Puck 'Puck_230517_39' Publication DOI
1c9ae8e1-2a57-4b5f-8a7b-3458b1a1005c
Mus musculus
15'907 cells x 29'286 genes h5ad
42 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA-Seq profiling of human embryonic kidney outer and inner corti... Publication DOI
E-GEOD-124472
Homo sapiens
15'922 cells h5ad
522 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNAseq of control chimeric mouse embryos at embryonic days 7.5 an... Publication DOI
E-MTAB-7324
Mus musculus
15'927 cells h5ad
880 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_200104_03 Publication DOI
10eed666-34e0-4b98-9384-179993873aa8
Mus musculus
16'027 cells x 19'194 genes h5ad
10.5 MB
 Not in ASAP Details
cellxgene
sc
All cells Publication DOI
78a1eb39-de7d-43ee-b860-50d253a4e8c6
Mus musculus
16'042 cells x 30'149 genes h5ad
231 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA sequencing of intestinal NKp46+ innate lymphoid cells (ILCs) ... Publication DOI
E-MTAB-11238
Mus musculus
16'073 cells h5ad
474 MB
 Not in ASAP Details
ebi_sc
sc
Effects of Post-Myocardial Infarction Heart Failure on the Bone Vascular Nich... Publication DOI
E-MTAB-10448
Mus musculus
16'085 cells h5ad
574 MB
 Not in ASAP Details
cellxgene
sc
Blood endothelial cells from integrated dataset of 20 donors Publication DOI
c35a95de-e54c-46c0-855f-984f21163279
Homo sapiens
16'119 cells x 36'166 genes h5ad
250 MB
 Not in ASAP Details
cellxgene
sc
L6b - MTG: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
8a8aedcb-5bb3-453d-a9f0-f37951ae1515
Homo sapiens
16'227 cells x 35'483 genes h5ad
574 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in the healthy human kidney: Puck_200104_23 Publication DOI
55158af8-7de6-48d5-8aa3-0088ebd7cd4a
Homo sapiens
16'234 cells x 24'648 genes h5ad
17.3 MB
 Not in ASAP Details
cellxgene
sc
Olah et al (2020) Single-cell Human Microglia Publication DOI
a1b9c51e-a408-4f7f-bccb-abefe20ae2a5
Homo sapiens
16'245 cells x 31'983 genes h5ad
90.7 MB
 Not in ASAP Details
broad_scp
sc
Leptin receptor neurons in the dorsomedial hypothalamus input to the circadia...
SCP2369
Mus musculus
16'281 cells x 25'981 genes rds
3.4 GB
 Not in ASAP Details
broad_scp
sc
Bronchiolitis Obliterans Syndrome - LungMAP
SCP1157
 16'305 cells x 35'349 genes h5ad
344 MB
 Not in ASAP Details
broad_scp
sc
HCA LungMAP COVID-19 Fibrotic Lung (Xavier)
SCP892
 16'306 cells x 26 genes counts_table
150 KB
 Not in ASAP Details
cellxgene
sc
Astro - neocortex: Human variation study (HVS) Publication DOI
ea95cdd5-cf7e-4d5d-a0bd-032776d32ae5
Homo sapiens
16'319 cells x 18'736 genes h5ad
1.29 GB
 Not in ASAP Details
cellxgene
sc
Submucosa Epcam-CD235ab-CD45-CD31- Publication DOI
d51dc6f3-de9d-4695-8ad9-ffcf94876e0f
Homo sapiens
16'338 cells x 32'088 genes h5ad
170 MB
 Not in ASAP Details
cellxgene
sc
In vitro differentiation of mouse ependymal cells (DIV3), all cells Publication DOI
612491cb-8ba7-492d-b9be-fc645ecf46a7
Mus musculus
16'401 cells x 31'729 genes h5ad
332 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA sequencing of myeloid cells from the aortas of ApoE-/- mice f... Publication DOI
E-MTAB-10743
Mus musculus
16'403 cells h5ad
355 MB
 Not in ASAP Details
cellxgene
sc
SCLC immune cells Publication DOI
76347874-8801-44bf-9aea-0da21c78c430
Homo sapiens
16'475 cells x 24'540 genes h5ad
654 MB
 Not in ASAP Details
cellxgene
sc
Bipolar cells of human eye Publication DOI
4e38f019-f8e8-44ae-ad32-ba500de6f64c
Homo sapiens
16'540 cells x 56'710 genes h5ad
147 MB
 Not in ASAP Details
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