External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
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Source Dataset Matrix Format ASAP Actions
cellxgene
sc
B cells -- CV19 infection, vaccination and HC Publication DOI
1a7e99fe-d5b6-44d7-aa50-c6ef6ab29761
Homo sapiens
20'407 cells x 32'344 genes h5ad
106 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_200210_04 Publication DOI
9246671b-f814-4252-8f1a-57f4f5e28f81
Mus musculus
20'424 cells x 19'631 genes h5ad
11.4 MB
 Not in ASAP Details
cellxgene
sc
Interneuron maturation in the human entorhinal cortex Publication DOI
72822932-10f6-466f-baf3-a2c1d89364bc
Homo sapiens
20'470 cells x 21'459 genes h5ad
357 MB
 Not in ASAP Details
cellxgene
sc
Late tip organoid Publication DOI
43a1506b-aa9e-46a3-b288-d210f4595ddf
Homo sapiens
20'475 cells x 19'865 genes h5ad
269 MB
 Not in ASAP Details
ebi_sc
sc
The human gastrointestinal tract through space and time - Adult GEX Publication DOI
E-MTAB-9543
Homo sapiens
20'484 cells h5ad
224 MB
 Not in ASAP Details
ebi_sc
sc
Trajectory Mapping of the Early Drosophila Germline Reveals Controls of Zygot... Publication DOI
E-GEOD-150568
Drosophila melanogaster
20'507 cells h5ad
681 MB
 Not in ASAP Details
cellxgene
sc
ccRCC - Single-cell analyses of renal cell cancers reveal insights into tumor... Publication DOI
be39785b-67cb-4177-be19-a40ee3747e45
Homo sapiens
20'509 cells x 32'088 genes h5ad
221 MB
 Not in ASAP Details
cellxgene
sc
Fibroblasts Publication DOI
e871881f-b42d-4500-906d-0972a14ba47d
Homo sapiens
20'515 cells x 32'383 genes h5ad
229 MB
 Not in ASAP Details
cellxgene
sc
Human Immune Cell Lineage Publication DOI
ac2fea99-ce08-4fca-8d03-a19f37bf21a3
Homo sapiens
20'556 cells x 28'171 genes h5ad
2.2 GB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191112_02 Publication DOI
34893c3b-1776-4a4c-9ea0-9f86ad168ae4
Mus musculus
20'568 cells x 21'123 genes h5ad
13.3 MB
 Not in ASAP Details
cellxgene
sc
NAC region Publication DOI
d7cff847-6403-44a6-ad8a-2f5a783639dd
Homo sapiens
20'571 cells x 32'344 genes h5ad
230 MB
 Not in ASAP Details
broad_scp
sc
Mouse Bone Marrow Stroma in Homeostasis
SCP361
 20'581 cells x 27'998 genes counts_table
302 MB
 Not in ASAP Details
cellxgene
sc
snRNA-seq of human retina - retinal ganglion cell subset - excluding midget c... Publication DOI
e404d417-56e4-40a5-b3c6-69e9f92d8cbd
Homo sapiens
20'587 cells x 35'475 genes h5ad
460 MB
 Not in ASAP Details
cellxgene
sc
Fibroblasts and Schwann cells Publication DOI
1851b6ab-2386-40a1-8c2a-b7cd895b889e
Homo sapiens
20'611 cells x 32'375 genes h5ad
185 MB
 Not in ASAP Details
cellxgene
sc
Unciliated epithelial cells from integrated dataset of 20 donors Publication DOI
19cca385-55f4-45dd-8e62-d9e15f59e32c
Homo sapiens
20'645 cells x 36'166 genes h5ad
427 MB
 Not in ASAP Details
cellxgene
sc
Single-cell reconstruction of follicular remodeling in the human adult ovary Publication DOI
1f1c5c14-5949-4c81-b28e-b272e271b672
Homo sapiens
20'676 cells x 32'088 genes h5ad
99.1 MB
 Not in ASAP Details
cellxgene
sc
Tongue - A single-cell transcriptomic atlas characterizes ageing tissues in t... Publication DOI
98ad5247-68f8-42f8-b8e5-7938cb373a91
Mus musculus
20'680 cells x 17'943 genes h5ad
442 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191223_22 Publication DOI
d18c575e-c435-43f5-b99b-b6936341c83d
Mus musculus
20'689 cells x 21'520 genes h5ad
22.2 MB
 Not in ASAP Details
cellxgene
sc
L5/6 NP - MTG: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
75e6eee5-d0e3-4291-9360-f288ffe6c7c4
Homo sapiens
20'741 cells x 35'483 genes h5ad
572 MB
 Not in ASAP Details
cellxgene
sc
thymus scRNA-seq atlas - fibroblast subset Publication DOI
93a3b257-359b-4266-b23f-64875d37a9e3
Homo sapiens
20'779 cells x 35'477 genes h5ad
71 MB
 Not in ASAP Details
cellxgene
sc
Vascular endothelial cells Publication DOI
4ebcbeeb-2208-4d30-acb2-8142a5201814
Homo sapiens
20'855 cells x 32'383 genes h5ad
183 MB
 Not in ASAP Details
hca
sc
Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19 Publication DOI
08fb10df-32e5-456c-9882-e33fcd49077a::1e11213b-0e28-4a11-bd79-f50b55600170
Homo sapiens
20'857 cells h5
51.2 MB
 Not in ASAP Details
cellxgene
sc
Single-cell atlas of 24 hormone therapy naive localised prostate cancers -- E... Publication DOI
b347446f-2e38-4248-96fb-39acc50f2112
Homo sapiens
20'858 cells x 32'397 genes h5ad
273 MB
 Not in ASAP Details
ebi_sc
sc
Single-Cell RNA Sequencing of Retinal Organoids Derived by CSC14 hESCs Publication DOI
E-MTAB-11121
Homo sapiens
20'861 cells h5ad
1.2 GB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in the healthy human kidney: Puck_200115_03 Publication DOI
2d4998cf-bd56-4e59-b57d-a04682a36ab1
Homo sapiens
20'866 cells x 26'099 genes h5ad
33.5 MB
 Not in ASAP Details
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