External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 18884 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191204_24 Publication DOI
707acde8-4e99-4e31-8da9-782ded87d136
Mus musculus
27'220 cells x 19'659 genes h5ad
11.3 MB
 Not in ASAP Details
broad_scp
sc
MYCT1 and IFITM interaction links endothelial endolysosomal trafficking to wh... Publication DOI
SCP3771
Mus musculus
27'226 cells x 32'285 genes rds
261 MB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the CNS other Publication DOI
b3327332-ad36-4f5d-b9a0-7e3a55606928
Danio rerio
27'338 cells x 32'031 genes h5ad
25.5 MB
 Not in ASAP Details
broad_scp
sc
PD-1 enhancer deletion
SCP1772
Mus musculus
27'362 cells x 14'462 genes rds
12.6 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_200104_10 Publication DOI
d4f003d4-1e87-4301-84e6-8e01a69aa426
Mus musculus
27'429 cells x 20'177 genes h5ad
14.4 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_200102_09 Publication DOI
5767c838-0d36-44bb-b025-a4dfe5cdd908
Mus musculus
27'479 cells x 21'482 genes h5ad
27.4 MB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the endothelium Publication DOI
6672ee00-8e76-4fa9-a54b-e238273d730b
Danio rerio
27'484 cells x 32'031 genes h5ad
34.8 MB
 Not in ASAP Details
broad_scp
sc
Retinal Bipolar Neuron Drop-seq Publication DOI
SCP3
 27'499 cells x 13'166 genes counts_table
1.03 GB
 Not in ASAP Details
broad_scp
sc
PIEZO channels link mechanical forces to uterine contractions in parturition Publication DOI
SCP2924
Mus musculus
27'505 cells x 23'509 genes h5ad
5.19 GB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the midbrain Publication DOI
dd8d88d7-c56e-4d34-bb13-ace12ae4da87
Danio rerio
27'534 cells x 32'031 genes h5ad
24.6 MB
 Not in ASAP Details
ebi_sc
sc
A human single cell atlas of the substantia nigra reveals novel cell specific... Publication DOI
E-HCAD-25
Homo sapiens
27'550 cells h5ad
1.2 GB
 Not in ASAP Details
cellxgene
sc
Human Stem Cells (LIV and TH) - A cell atlas of human thymic development defi... Publication DOI
814f2c97-49e4-4a17-be26-fde3c4c57d1b
Homo sapiens
27'589 cells x 32'088 genes h5ad
445 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191204_05 Publication DOI
2214c7a9-371f-4520-a2d0-88524b80b577
Mus musculus
27'639 cells x 21'394 genes h5ad
21.3 MB
 Not in ASAP Details
cellxgene
sc
snRNA-seq of human adipose tissue - adipocytes from subcutaneous and visceral... Publication DOI
11622d58-4dfe-4a81-b3d2-c4cabbfd636a
Homo sapiens
27'665 cells x 35'477 genes h5ad
328 MB
 Not in ASAP Details
cellxgene
sc
Living donor kidney Publication DOI
0bae7ebf-eb54-46a6-be9a-3461cecefa4c
Homo sapiens
27'675 cells x 26'791 genes h5ad
453 MB
 Not in ASAP Details
hca
sc
Spatial transcriptomics of healthy and fibrotic human liver at single-cell re... Publication DOI
64809a52-f703-4aec-b3a5-eca808a971d0::b3e48131-280e-488b-8e95-4321bef2966e
Homo sapiens
27'692 cells h5ad
5.46 GB
 Not in ASAP Details
cellxgene
sc
Cutaneous melanoma, lymph node metastasis Puck_220215_13 Publication DOI
89972213-8510-49c3-a55a-01cd248ef88a
Homo sapiens
27'757 cells x 29'586 genes h5ad
27.8 MB
 Not in ASAP Details
cellxgene
sc
Sub UMAP of the spinal cord Publication DOI
8d739cc9-4043-40cc-92d5-7b328f2f8ae1
Danio rerio
27'772 cells x 32'031 genes h5ad
25.2 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191204_18 Publication DOI
3483835a-fdd2-4589-8de3-530e2a13ad14
Mus musculus
27'814 cells x 18'729 genes h5ad
6.94 MB
 Not in ASAP Details
cellxgene
sc
10X Visium spatial transcriptomics on tumor-normal interface tissue sections Publication DOI
eaf0c852-1dff-47ab-8de2-a33a59969a40
Homo sapiens
27'912 cells x 35'469 genes h5ad
91.3 MB
 Not in ASAP Details
hca
sc
Mapping single-cell transcriptomes in the intra-tumoral and associated territ... Publication DOI
8f1f653d-3ea1-4d8e-b4a7-b97dc852c2b1::1cf6d16a-a454-475a-8885-505541ad7802
Homo sapiens
27'912 cells h5ad
1.06 GB
 Not in ASAP Details
cellxgene
sc
CD34+ Fetal Bone Marrow, Fetal Liver, Cord Blood (CITE-seq) Publication DOI
471647b3-04fe-4c76-8372-3264feb950e8
Homo sapiens
27'998 cells x 31'042 genes h5ad
578 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebellum (CB) - Lateral hemisphere of cerebellum - CBL Publication DOI
a59ba9fa-1407-4f15-8c56-d3637421570d
Homo sapiens
28'028 cells x 58'232 genes h5ad
156 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebral cortex (Cx) - Cuneus, rostral part - Area Prostriata - Pro Publication DOI
ff7d15fa-f4b6-4a0e-992e-fd0c9d088ded
Homo sapiens
28'051 cells x 58'232 genes h5ad
333 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Hypothalamus (HTH) - mammillary region of HTH (HTHma) - mammillar... Publication DOI
5bc23cb2-8cfc-4960-bab1-c3027fbeefc4
Homo sapiens
28'155 cells x 58'232 genes h5ad
382 MB
 Not in ASAP Details
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