External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 18884 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
ALL- Cells of gingivo-buccal oral squamous cell carcinoma Publication DOI
55ca4411-8c7d-4aef-a572-50852e030c05
Homo sapiens
28'186 cells x 26'364 genes h5ad
196 MB
 Not in ASAP Details
ebi_sc
sc
The Single Cell Transcriptomic Landscape of Early Human Diabetic Nephropathy Publication DOI
E-GEOD-131882
Homo sapiens
28'348 cells h5ad
1 GB
 Not in ASAP Details
matkp
sc
Single-nuclei transcriptome of human visceral adipose tissue, 2022 Publication DOI
snRNA_StriederBarboza2022_Humans_SCP1903_VAT
Homo sapiens
28'356 cells zip
74.7 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in the healthy human kidney: Puck_200104_20 Publication DOI
7f479f74-5a7e-4666-9f0d-3af0b341eb0d
Homo sapiens
28'422 cells x 24'818 genes h5ad
27.4 MB
 Not in ASAP Details
matkp
sc
Single cell atlas of human subcutaneous adipose tissue (whole cell), 2022 Publication DOI
SingleCell_Emont2022_Humans_SCP1376_WC_SAT
Homo sapiens
28'465 cells zip
135 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_200210_03 Publication DOI
6bbfca2f-b2fb-4285-98d2-19fa9b9f6692
Mus musculus
28'577 cells x 20'318 genes h5ad
17.9 MB
 Not in ASAP Details
cellxgene
sc
scRNA-seq analysis of stromal cells of healthy human fallopian tubes Publication DOI
03c544fb-a103-4d18-9230-eae9cfee3af2
Homo sapiens
28'691 cells x 36'020 genes h5ad
425 MB
 Not in ASAP Details
cellxgene
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra -... Publication DOI
c3fe3c1e-5bf8-4678-b74a-79899243ad41
Homo sapiens
28'702 cells x 22'489 genes h5ad
211 MB
 Not in ASAP Details
cellxgene
sc
Vip - neocortex: Human variation study (HVS) Publication DOI
93091496-be48-4122-b945-9af9c22a7535
Homo sapiens
28'718 cells x 18'736 genes h5ad
2.34 GB
 Not in ASAP Details
cellxgene
sc
Dissection: Body of hippocampus (HiB) - Rostral CA1-CA3 Publication DOI
182f6a56-7360-4924-a74e-1772e07b3031
Homo sapiens
28'724 cells x 58'232 genes h5ad
343 MB
 Not in ASAP Details
cellxgene
sc
Lamina propria CD45+CD3-CD19-HLADR+ Publication DOI
9133e1f5-3870-435b-871d-d8ea467e111e
Homo sapiens
28'758 cells x 21'940 genes h5ad
340 MB
 Not in ASAP Details
cellxgene
sc
Urethral luminal epithelia are castration-insensitive cells of the proximal p... Publication DOI
8b2e5453-faf7-46ea-9073-aea69b283cb7
Homo sapiens
28'847 cells x 22'340 genes h5ad
274 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell transcriptome atlas and chromatin accessibility landscape reveal ... Publication DOI
E-ENAD-52
Oryza sativa Japonica Group
28'857 cells h5ad
1 GB
 Not in ASAP Details
cellxgene
sc
Limb muscle - A single-cell transcriptomic atlas characterizes ageing tissues... Publication DOI
a7ace090-1ba1-47f2-8def-6e11298b7816
Mus musculus
28'867 cells x 17'943 genes h5ad
355 MB
 Not in ASAP Details
cellxgene
sc
Sst - neocortex: Human variation study (HVS) Publication DOI
3079e9b0-c6db-45c8-b998-a4555a73968e
Homo sapiens
28'943 cells x 18'736 genes h5ad
2.38 GB
 Not in ASAP Details
cellxgene
sc
Dissection: Amygdaloid complex (AMY) - Basolateral nuclear group (BLN) - late... Publication DOI
7d3ab174-e433-40fc-a352-6fe71b1a19f9
Homo sapiens
28'984 cells x 58'232 genes h5ad
327 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191109_09 Publication DOI
286fead0-7be7-46db-b358-7abc6d39adf7
Mus musculus
29'011 cells x 20'105 genes h5ad
12.2 MB
 Not in ASAP Details
cellxgene
sc
OPC - DLPFC: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
58c43cc2-e00e-43c4-94eb-8501369264e1
Homo sapiens
29'041 cells x 35'483 genes h5ad
647 MB
 Not in ASAP Details
cellxgene
sc
Differentiation path from ASPCs to adipocytes in visceral adipose tissue doub... Publication DOI
00593d17-0693-4646-acad-89dbefba11bb
Homo sapiens
29'078 cells x 35'477 genes h5ad
254 MB
 Not in ASAP Details
ebi_sc
sc
A cell atlas of human thymic development defines T cell repertoire formation,... Publication DOI
E-CURD-80
Mus musculus
29'100 cells h5ad
742 MB
 Not in ASAP Details
matkp
sc
22 samples of subcutaneous abdominal adipose tissue (single-nucleus), 2024 (s...
snRNA_Streets2024_Humans_SAT
Homo sapiens
29'147 cells zip
292 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq of fibroblasts influenced by exosomes derived from melano... Publication DOI
E-MTAB-10290
Homo sapiens
29'203 cells h5ad
1.6 GB
 Not in ASAP Details
cellxgene
sc
L6 CT - DLPFC: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
a4e89c26-e8d4-4471-9b06-16a1405880f0
Homo sapiens
29'343 cells x 35'483 genes h5ad
1.27 GB
 Not in ASAP Details
cellxgene
sc
Single-cell multi-omic analysis of positively selected thymocytes Publication DOI
8d819c30-9759-41b4-9871-8acddfadb0bc
Mus musculus
29'408 cells x 15'942 genes h5ad
1.34 GB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191223_24 Publication DOI
c9466ba3-2b92-4fb5-9972-33e3940ff9b0
Mus musculus
29'434 cells x 21'323 genes h5ad
23 MB
 Not in ASAP Details
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