External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
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Source Dataset Matrix Format ASAP Actions
ebi_sc
sc
Defining the Activated Fibroblast Population in Lung Fibrosis Using Single Ce... Publication DOI
E-HCAD-14
Mus musculus
30'650 cells h5ad
872 MB
 Not in ASAP Details
cellxgene
sc
scRNA-seq data - myeloid cells Publication DOI
a6388a6f-6076-401b-9b30-7d4306a20035
Homo sapiens
30'789 cells x 32'383 genes h5ad
300 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191223_05 Publication DOI
9009cf69-bba5-4b18-9152-d15fedda8181
Mus musculus
30'888 cells x 20'215 genes h5ad
22.5 MB
 Not in ASAP Details
cellxgene
sc
Tabula Sapiens - Mammary Publication DOI
2ba40233-8576-4dec-a5f1-2adfa115e2dc
Homo sapiens
30'936 cells x 60'606 genes h5ad
1.24 GB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_200104_06 Publication DOI
1fed33a0-3c5f-47c0-9c5f-39435c6ffbd2
Mus musculus
30'942 cells x 20'931 genes h5ad
23.7 MB
 Not in ASAP Details
cellxgene
sc
Human adult ureter Publication DOI
3e524d45-2265-4440-b903-3c30d51a0b17
Homo sapiens
30'942 cells x 35'459 genes h5ad
380 MB
 Not in ASAP Details
cellxgene
sc
Differentiation path from ASPCs to adipocytes in visceral adipose tissue Publication DOI
ea15345a-4b48-46c0-b641-f338649ebf13
Homo sapiens
30'969 cells x 35'477 genes h5ad
289 MB
 Not in ASAP Details
cellxgene
sc
Bone marrow organoids (BMO) Publication DOI
78c62d4e-abf1-405b-bb51-368720814529
Homo sapiens
31'040 cells x 20'577 genes h5ad
359 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebral cortex (Cx) - Middle frontal gyrus (MFG) - A46 Publication DOI
db1d2c1b-2ee1-45d5-9d53-69a327cd77e6
Homo sapiens
31'065 cells x 58'232 genes h5ad
356 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Amygdaloid complex (AMY) - basolateral nuclear group (BLN) - baso... Publication DOI
4593c820-512d-4805-a10f-c0b864a7cc8c
Homo sapiens
31'090 cells x 58'232 genes h5ad
411 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_200104_07 Publication DOI
8680267b-9cb3-4660-ac8d-a8ee0de700be
Mus musculus
31'194 cells x 21'107 genes h5ad
23.2 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Paleocortex (PalCx) - Anterior Olfactory Nucleus - AON Publication DOI
f502c312-05dc-4fd4-a762-92a63e92b539
Homo sapiens
31'230 cells x 58'232 genes h5ad
389 MB
 Not in ASAP Details
cellxgene
sc
HLiCA - human liver mesenchyme cells Publication DOI
199febfe-32c1-4cf7-9bd9-745206458d06
Homo sapiens
31'278 cells x 32'624 genes h5ad
375 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Thalamus (THM) - Anterior nuclear complex - ANC Publication DOI
e8681d74-ac9e-4be5-be14-1cf1bbd54dd7
Homo sapiens
31'307 cells x 58'232 genes h5ad
388 MB
 Not in ASAP Details
broad_scp
sc
HCA LungMAP COVID-19 Vanderbilt Kropski bioRxiv Habermann
SCP897
 31'326 cells x 27 genes counts_table
429 KB
 Not in ASAP Details
cellxgene
sc
Major cell cluster: Oligodendrocytes Publication DOI
a99b49e5-07fc-46a8-a161-201345a97a54
Mus musculus
31'387 cells x 45'525 genes h5ad
321 MB
 Not in ASAP Details
cellxgene
sc
Minor Salivary Gland Atlas Publication DOI
e0549fbf-cf9c-401a-b85f-6ba00d916e43
Homo sapiens
31'468 cells x 35'377 genes h5ad
145 MB
 Not in ASAP Details
cellxgene
sc
15 leukemic bone marrow donors Publication DOI
b3a5a10f-b1cb-4e8e-abce-bf345448625b
Homo sapiens
31'586 cells x 458 genes h5ad
26.2 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq on enriched cardiac fibroblasts from the healthy, sham or... Publication DOI
E-MTAB-9583
Mus musculus
31'588 cells h5ad
1.1 GB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191204_22 Publication DOI
526a2472-0913-4f36-92f1-72f58ddf9524
Mus musculus
31'600 cells x 21'154 genes h5ad
22.9 MB
 Not in ASAP Details
ebi_sc
sc
Profiling of CD34+ cells from human bone marrow to understand hematopoiesis Publication DOI
E-HCAD-6
Homo sapiens
31'634 cells h5ad
1.2 GB
 Not in ASAP Details
cellxgene
sc
A single-cell atlas of the healthy breast tissues reveals clinically relevant... Publication DOI
de985818-285f-4f59-9dbd-d74968fddba3
Homo sapiens
31'696 cells x 32'397 genes h5ad
334 MB
 Not in ASAP Details
ebi_sc
sc
Spatio-temporal immune zonation of the human kidney Publication DOI
E-HCAD-10
Homo sapiens
31'711 cells h5ad
1.2 GB
 Not in ASAP Details
cellxgene
sc
Human embryonic male gonadal tissue Publication DOI
43dc52cb-92eb-4256-b3a8-5ef220b3d292
Homo sapiens
31'749 cells x 35'476 genes h5ad
362 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA sequencing of naive and primed human pluripotent stem cells t... Publication DOI
E-MTAB-10018
Homo sapiens
31'795 cells h5ad
2 GB
 Not in ASAP Details
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