External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 18884 candidates
Source Dataset Matrix Format ASAP Actions
hca
sc
Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis. Publication DOI
cd61771b-661a-4e19-b269-6e5d95350de6::5b177bff-ad3a-4c18-8bbe-d4dafdd940a2
Homo sapiens
31'872 cells mtx
492 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq of Drosophila melanogaster male late third instar larval ... Publication DOI
E-GEOD-125947
Drosophila melanogaster
31'893 cells h5ad
553 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebral cortex (Cx) - Occipitotemporal (fusiform) gyrus, tempora... Publication DOI
f8dda921-5fb4-4c94-a654-c6fc346bfd6d
Homo sapiens
31'899 cells x 58'232 genes h5ad
357 MB
 Not in ASAP Details
cellxgene
sc
L5IT - neocortex: Human variation study (HVS) Publication DOI
34229bdc-a895-4394-8820-574e4028d8c6
Homo sapiens
31'924 cells x 18'736 genes h5ad
2.85 GB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191206_02 Publication DOI
3ddfa0d8-ae3d-4970-9660-aa8dfbb98b63
Mus musculus
31'954 cells x 20'776 genes h5ad
18.5 MB
 Not in ASAP Details
ebi_sc
sc
A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cord Publication DOI
E-GEOD-141807
Drosophila melanogaster
32'004 cells h5ad
521 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191204_13 Publication DOI
03b3e7b1-1d38-4b39-b996-28ace9c65492
Mus musculus
32'070 cells x 21'914 genes h5ad
23.3 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebral cortex (Cx) - Cingulate gyrus, rostral (CgGr) - Ventral ... Publication DOI
3f31f8ce-bbf6-4df8-8203-aa240ed03026
Homo sapiens
32'157 cells x 58'232 genes h5ad
449 MB
 Not in ASAP Details
broad_scp
sc
scRNAseq on livers from male mice on a 52 week Western Diet or Chow Diet. Publication DOI
SCP3190
Mus musculus
32'282 cells x 14'161 genes h5ad
3.85 GB
 Not in ASAP Details
cellxgene
sc
Dissection: Midbrain (M) - Inferior colliculus and nearby nuclei - IC Publication DOI
5e5ab909-f73f-4b57-98a0-6d2c5662f6a4
Homo sapiens
32'306 cells x 58'232 genes h5ad
330 MB
 Not in ASAP Details
ebi_sc
sc
Single cell sequencing of 3 lung carcinomas Publication DOI
E-MTAB-6653
Homo sapiens
32'341 cells h5ad
818 MB
 Not in ASAP Details
cellxgene
sc
innate T cells -- CV19 infection, vaccination and HC Publication DOI
693ae928-96ba-47de-b9d9-1321c675bfcd
Homo sapiens
32'444 cells x 32'344 genes h5ad
174 MB
 Not in ASAP Details
cellxgene
sc
Ileum Publication DOI
36c867a7-be10-4e69-9b39-5de12b0af6da
Homo sapiens
32'458 cells x 21'752 genes h5ad
121 MB
 Not in ASAP Details
cellxgene
sc
OPC - MTG: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
1c05b7ae-4dfb-4c1b-a441-4b23c04b169e
Homo sapiens
32'493 cells x 35'483 genes h5ad
551 MB
 Not in ASAP Details
broad_scp
sc
Mouse Retinal Cell Atlas: Molecular Identification of over Sixty Amacrine Cel...
SCP919
 32'523 cells x 17'429 genes counts_table
2.14 GB
 Not in ASAP Details
cellxgene
sc
Nasopharynx Publication DOI
13b61a7d-5605-4948-ba48-02c588960143
Homo sapiens
32'588 cells x 31'738 genes h5ad
256 MB
 Not in ASAP Details
cellxgene
sc
Human tonsil complete integrated cell set scRNA Publication DOI
44882825-0da1-4547-b721-2c6105d4a9d1
Homo sapiens
32'607 cells x 19'517 genes h5ad
247 MB
 Not in ASAP Details
cellxgene
sc
Oligodendrocyte Publication DOI
687a4770-2114-496b-a3f0-2e06bb018d65
Mus musculus
32'620 cells x 20'210 genes h5ad
291 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebral cortex (Cx) - Cuneus, caudal part - Peristriate Cortex - V2 Publication DOI
ed33c203-233a-476a-a56b-28da945fdd32
Homo sapiens
32'638 cells x 58'232 genes h5ad
370 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Basal nuclei (BN) - Body of the Caudate - CaB Publication DOI
529bb209-9d7b-44da-bfa4-f6e4745c46c2
Homo sapiens
32'678 cells x 58'232 genes h5ad
458 MB
 Not in ASAP Details
broad_scp
sc
HCA LungMAP COVID-19 Esophagus Mucosa Cross Tissue
SCP870
 32'690 cells x 27 genes counts_table
143 KB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in mouse: Puck_191204_07 Publication DOI
2e14e403-84fd-4326-ad6b-98523040c3d6
Mus musculus
32'706 cells x 21'953 genes h5ad
20.7 MB
 Not in ASAP Details
broad_scp
sc
Resolving the Bone Marrow Niche Heterogeneity Publication DOI
SCP1248
Mus musculus
32'743 cells x 17'173 genes counts_table
160 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebral cortex (Cx) - Anterior parahippocampal gyrus (AG) - Late... Publication DOI
46ff9dc2-3d87-4b36-91aa-ffa8aa13c52e
Homo sapiens
32'745 cells x 58'232 genes h5ad
475 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Cerebral cortex (Cx) - Transverse temporal gyrus (TTG) - Primary ... Publication DOI
489eaa11-c119-4a5f-b44b-81e33c80c0ef
Homo sapiens
32'790 cells x 58'232 genes h5ad
408 MB
 Not in ASAP Details
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