External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hubmap sc	RNAseq [Salmon] data from the spleen of a 10-year-old white male HBM698.FWFH.998 Homo sapiens	—	h5ad 53.6 MB	Not in ASAP	Details
hca sc	A human fetal lung cell atlas uncovers proximal-distal gradients of different... Publication DOI 2fe3c60b-ac1a-4c61-9b59-f6556c0fce63::f2c7de48-8f58-49cf-b437-ec33ca1ade29 Homo sapiens	—	h5ad 53.6 MB	Not in ASAP	Details
geo sc	Inhibition of the Gerozyme 15-Prostaglandin Dehydrogenase Promotes Articular ... GSE308009 Mus musculus	—	h5ad 54 MB	Not in ASAP	Details
hca sc	Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial a... Publication DOI c1a9a93d-d9de-4e65-9619-a9cec1052eaa::bae63ffd-8307-59fd-a9b7-54c9f0b167ee Homo sapiens	—	loom 54.7 MB	Not in ASAP	Details
hca sc	A human fetal lung cell atlas uncovers proximal-distal gradients of different... Publication DOI 2fe3c60b-ac1a-4c61-9b59-f6556c0fce63::d89258a1-23db-43ef-b904-a2868bbc5cbe Homo sapiens	—	h5ad 55.1 MB	Not in ASAP	Details
geo sc	Single-cell RNA sequencing of ovarian CD45+ immune cells from gonadotropin-tr... GSE336281 Mus musculus	—	mtx 55.5 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Ret... Publication DOI 4bdaedeb-99ae-4fb4-be69-57497cf98b90::6af74aa5-fe31-40a3-b06b-c33368d91e6f Homo sapiens	—	mtx 55.7 MB	Not in ASAP	Details
hca sc	Spatial and single-cell transcriptional profiling identifies functionally dis... Publication DOI 05657a59-9f9d-4bb9-b77b-24be13aa5cea::8f02cde0-e572-5cad-9ec6-bb1278e84283 Homo sapiens	—	loom 55.8 MB	Not in ASAP	Details
hca sc	Re-evaluation of human BDCA-2+ DC during acute sterile skin inflammation. Publication DOI 67a3de09-45b9-49c3-a068-ff4665daa50e::feb5f419-da5c-58ac-b866-d5f1fa9e0548 Homo sapiens	—	loom 55.9 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 54-year-old white male HBM743.RNWC.765 Homo sapiens	—	h5ad 55.9 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 54-year-old white male HBM425.GDJT.648 Homo sapiens	—	h5ad 55.9 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the spleen of a 18-year-old black or african americ... HBM279.SLFX.335 Homo sapiens	—	h5ad 56 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the bladder of a 17-month-old white female HBM355.NTQW.365 Homo sapiens	—	h5ad 56.5 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::512987ef-7841-5b6a-915f-8c9f17e821c4 Homo sapiens	—	mtx 56.5 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::16f6f9cd-fd76-474c-8fb1-b2782088f604 Homo sapiens	—	h5 57 MB	Not in ASAP	Details
geo sc	Single cell transcriptome landscape of human hematopoietic stem and progenito... GSE157123 Homo sapiens	—	mtx 57.6 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::140d1efe-73f4-5747-ac00-077876c95504 Homo sapiens	—	mtx 57.6 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::8f195690-41f6-5f70-8d6e-2c2adb20295c Homo sapiens	—	loom 57.7 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::171aff35-3a31-4080-80bc-8c777916a5a3 Homo sapiens	—	h5 58.5 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Ret... Publication DOI 4bdaedeb-99ae-4fb4-be69-57497cf98b90::a3a4e028-cb21-441f-9c57-05caa274432f Homo sapiens	—	mtx 58.5 MB	Not in ASAP	Details
broad_scp sc	MuST SCP2425	—	h5ad 58.8 MB	Not in ASAP	Details
geo sc	Enhancer Dynamics and Spatial Organization Drive Anatomically Restricted Cell... GSE300798 Homo sapiens	—	mtx 59.2 MB	Not in ASAP	Details
hca sc	Cryopreservation and post-thaw characterization of dissociated human islet cells Publication DOI 8559a8ed-5d8c-4fb6-bde8-ab639cebf03c::2dc04008-2d62-5c3f-a6f1-c7cae7ac1009 Homo sapiens	—	loom 59.5 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 24-year-old white male HBM374.PCQG.742 Homo sapiens	—	h5ad 59.6 MB	Not in ASAP	Details
hca sc	Single cell RNA sequencing of multiple myeloma II Publication DOI 0c3b7785-f74d-4091-8616-a68757e4c2a8::3014ec47-1399-57ca-ab74-c8c296232b9e Homo sapiens	—	loom 60.6 MB	Not in ASAP	Details