External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	Spatiotemporal Analysis of Human Intestinal Development at Single Cell Resolu... Publication DOI fa3f460f-4fb9-4ced-b548-8ba6a8ecae3f::641912d3-23cd-4072-9eaa-2c8c52079d56 Homo sapiens	—	h5 60.9 MB	Not in ASAP	Details
hca sc	Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic ... Publication DOI 425c2759-db66-4c93-a358-a562c069b1f1::50c55c7a-56bf-45ca-b822-8a562a4da213 Mus musculus	—	h5 61.3 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::1da5f078-5b05-4d91-8ed6-4ac7a700832a Homo sapiens	—	h5 61.4 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::343d627d-1905-4e2b-b65e-59b780b0012f Homo sapiens	—	h5 62.2 MB	Not in ASAP	Details
hca sc	Single-cell analysis reveals congruence between kidney organoids and human fe... Publication DOI 962bd805-eb89-4c54-bad2-008e497d1307::7a06c21e-cd49-5754-971f-fe7b620937fd Homo sapiens	—	mtx 62.4 MB	Not in ASAP	Details
hca sc	Spatiotemporal Analysis of Human Intestinal Development at Single Cell Resolu... Publication DOI fa3f460f-4fb9-4ced-b548-8ba6a8ecae3f::a78d604e-1649-445d-aa9c-ae895ffb8bdf Homo sapiens	—	h5 62.7 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 14-year-old white female HBM398.JQZB.348 Homo sapiens	—	h5ad 62.7 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 14-year-old white female HBM648.DKQK.874 Homo sapiens	—	h5ad 62.7 MB	Not in ASAP	Details
hca sc	Spatiotemporal Analysis of Human Intestinal Development at Single Cell Resolu... Publication DOI fa3f460f-4fb9-4ced-b548-8ba6a8ecae3f::8c148090-cf81-4832-a55a-c2c024935875 Homo sapiens	—	h5 62.9 MB	Not in ASAP	Details
hca sc	Single cell analysis of endometriosis reveals a coordinated transcriptional p... Publication DOI 2b81ecc4-6ee0-438f-8c5b-c10b2464069e::9c923ea0-4abb-4540-a2df-117e6b16a851 Homo sapiens	—	h5 63.5 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::48968ec5-8b4b-4778-b708-e9538086e35e Homo sapiens	—	h5 64 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 76-year-old white male HBM936.MHTZ.834 Homo sapiens	—	h5ad 64.1 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 76-year-old white male HBM268.RGJT.587 Homo sapiens	—	h5ad 64.1 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the thymus of a 1-year-old white male HBM538.PHSC.677 Homo sapiens	—	h5ad 64.2 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 78-year-old black or afric... HBM962.KQLZ.422 Homo sapiens	—	h5ad 64.5 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::173f2201-086d-4120-a83b-a13169a380aa Homo sapiens	—	h5 64.5 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 24-year-old white female HBM745.RQWF.695 Homo sapiens	—	h5ad 64.7 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 67-year-old white female HBM758.GVSL.783 Homo sapiens	—	h5ad 64.7 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM963.KZKG.549 Homo sapiens	—	h5ad 65.4 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM675.RVGB.258 Homo sapiens	—	h5ad 65.4 MB	Not in ASAP	Details
hca sc	Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI 9d97f01f-9313-416e-9b07-560f048b2350::cee3ed0a-36a0-51dc-87f2-f8b1650b7b47 Homo sapiens	—	mtx 65.7 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 24-year-old white female HBM927.FWCN.753 Homo sapiens	—	h5ad 65.7 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::82c0b47c-70e0-4e74-bf18-04047b9e1ed6 Homo sapiens	—	h5 66 MB	Not in ASAP	Details
hca sc	Single-cell omics reveal human mononuclear phagocyte heterogeneity and inflam... Publication DOI ccd1f1ba-74ce-469b-9fc9-f6faea623358::f02fb30a-1f32-50d0-a3d5-95051ffa5899 Homo sapiens	—	loom 66 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 30-year-old white male HBM259.DZXX.383 Homo sapiens	—	h5ad 66 MB	Not in ASAP	Details