External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hubmap sc	RNAseq [Salmon] data from the large intestine of a 78-year-old black or afric... HBM839.ZFRD.789 Homo sapiens	—	h5ad 66.1 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::0e1b868b-7330-4b21-a425-2c6140a6ff3f Homo sapiens	—	h5 66.2 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::07d9a2f4-91e2-476b-b26c-b5c17f4cd533 Homo sapiens	—	h5 66.9 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Ret... Publication DOI 4bdaedeb-99ae-4fb4-be69-57497cf98b90::29601260-3240-4845-82ed-9ac4a03d268b Homo sapiens	—	mtx 67.2 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 69-year-old white female HBM597.PBJW.593 Homo sapiens	—	h5ad 67.2 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 69-year-old white female HBM874.GLHT.852 Homo sapiens	—	h5ad 67.2 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::ba9fd8d3-da61-443b-8c0f-1b951a00de6b Homo sapiens	—	h5 67.2 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::0720c695-2be2-456d-a4b0-ee9606e57881 Homo sapiens	—	h5 67.3 MB	Not in ASAP	Details
geo sc	In vitro PI3Kδ inhibition skews CD8 T cell differentiation towards progenitor... GSE286925 Mus musculus	—	mtx 67.7 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::f659d07b-7fa6-49bc-a4ac-dd617b3cbb90 Homo sapiens	—	h5 67.8 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::65e207f6-8b39-4fcb-a845-95cf72e2183f Homo sapiens	—	h5 68.2 MB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::5af4e138-19da-5a7e-8819-aded96ef6c3e Homo sapiens	—	loom 68.3 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white female HBM675.VBDH.688 Homo sapiens	—	h5ad 68.7 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (right) of a 57-year-old white female HBM475.CVXD.875 Homo sapiens	—	h5ad 68.7 MB	Not in ASAP	Details
geo sc	Inhibition of NFAT after human uterus transplant promotes loss of tissue-resi... GSE292829 Homo sapiens	—	mtx 68.7 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM887.DDJL.589 Homo sapiens	—	h5ad 68.9 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM223.JQLM.452 Homo sapiens	—	h5ad 69 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 78-year-old black or afric... HBM255.NWHK.947 Homo sapiens	—	h5ad 69.3 MB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::c448223f-0e7b-5ec3-9f44-dfccade3fbbf Homo sapiens	—	loom 69.4 MB	Not in ASAP	Details
geo sc	High-resolution and noninvasive profiling of the tumor microenvironment with ... GSE320040 Homo sapiens	—	mtx 69.5 MB	Not in ASAP	Details
geo sc	Single-cell RNA sequencing of kidney tissue from a conditional Vhlh knockout ... GSE301372 Mus musculus	—	rds 69.6 MB	Not in ASAP	Details
geo sc	scRNA-sequencing of mouse MASH liver and healthy control GSE307893 Mus musculus	—	mtx 70.2 MB	Not in ASAP	Details
hca sc	Spatiotemporal Analysis of Human Intestinal Development at Single Cell Resolu... Publication DOI fa3f460f-4fb9-4ced-b548-8ba6a8ecae3f::b26b04a5-4451-490b-9dea-042eac3a25dd Homo sapiens	—	h5 70.6 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 24-year-old white female HBM536.FHLK.529 Homo sapiens	—	h5ad 71.4 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::832cea51-7a81-464e-95c8-8c72317adcf5 Homo sapiens	—	h5 71.4 MB	Not in ASAP	Details