External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	Single-cell RNA Sequencing of human microglia from post mortem Alzheimers Dis... Publication DOI b51f49b4-0d2e-4cbd-bbd5-04cd171fc2fa::2164ecdc-159b-5f05-9969-f9df2f92d399 Homo sapiens	—	loom 77.1 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::e0c8764a-a70a-4ee2-ac29-599b13391e54 Homo sapiens	—	h5 77.4 MB	Not in ASAP	Details
geo sc	Spatiotemporal single cell analysis of endothelial cells in response to T cel... GSE289961 Mus musculus	—	mtx 77.5 MB	Not in ASAP	Details
hca sc	Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Ret... Publication DOI 4bdaedeb-99ae-4fb4-be69-57497cf98b90::f243bb47-f73d-4b0d-9c73-ee2e587c40c0 Homo sapiens	—	mtx 77.7 MB	Not in ASAP	Details
hca sc	Characterization of altered molecular mechanisms in Parkinson's disease throu... Publication DOI 57a2c2de-b0d4-465a-be53-a41e59e75fab::7feb9027-b24e-452a-92bb-a0f09555189c Homo sapiens	—	h5 77.8 MB	Not in ASAP	Details
geo sc	Identification of a human cDC2 homeostatic maturation program by scRNA-seq GSE267253 Homo sapiens	—	rds 77.9 MB	Not in ASAP	Details
hca sc	Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI f83165c5-e2ea-4d15-a5cf-33f3550bffde::6d4fedcf-857d-5fbb-9928-8b9605500a69 Homo sapiens	—	h5ad 78.3 MB	Not in ASAP	Details
hca sc	Single-cell transcriptional profiles in human and mouse skeletal muscle Publication DOI a39728aa-70a0-4201-b0a2-81b7badf3e71::bb6877e0-28bb-5ce9-a4bf-d9ee988d511e Mus musculus	—	loom 78.9 MB	Not in ASAP	Details
hca sc	Anatomically distinct fibroblast subsets determine skin autoimmune patterns. Publication DOI 69324a96-a68a-4514-bbb4-f8f3ea4bd0f1::5729ea81-1171-4125-afbc-afe604fbf603 Homo sapiens	—	mtx 79 MB	Not in ASAP	Details
hca sc	Spatial multi-omic map of human myocardial infarction Publication DOI e9f36305-d857-44a3-93f0-df4e6007dc97::9e544d74-f984-47c5-8c46-866e2935a91c Homo sapiens	—	h5 79.7 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 78-year-old black or afric... HBM685.MSCQ.978 Homo sapiens	—	h5ad 79.8 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the large intestine of a 24-year-old white male HBM632.WVCH.348 Homo sapiens	—	h5ad 80.3 MB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::7fc04d97-118e-550f-a8a1-79ecc78646cb Homo sapiens	—	loom 80.7 MB	Not in ASAP	Details
geo sc	Single cell RNAseq of Tumour Endothelial Cell from response or partial respon... GSE314267 Mus musculus	—	rds 80.8 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 56-year-old black or african... HBM573.JMXM.823 Homo sapiens	—	h5ad 81 MB	Not in ASAP	Details
hca sc	Characterization of altered molecular mechanisms in Parkinson's disease throu... Publication DOI 57a2c2de-b0d4-465a-be53-a41e59e75fab::870a8d92-ee11-4039-8965-b6a8a67c799a Homo sapiens	—	h5 81.4 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the small intestine of a 24-year-old white male HBM827.VSPC.775 Homo sapiens	—	h5ad 81.5 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 25-year-old white female HBM253.ZBGF.863 Homo sapiens	—	h5ad 81.6 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 69-year-old white female HBM524.KHPH.599 Homo sapiens	—	h5ad 81.6 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 69-year-old white female HBM368.JCBG.263 Homo sapiens	—	h5ad 81.6 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the kidney (left) of a 40-year-old white female HBM845.SFMK.942 Homo sapiens	—	h5ad 81.8 MB	Not in ASAP	Details
hca sc	Single-cell multi-omics analysis of human pancreatic islets reveals novel cel... Publication DOI daef3fda-2620-45ae-a3f7-1613814a35bf::91f902b7-5795-4dbd-9a6f-5104efed5f12 Homo sapiens	—	h5 82.5 MB	Not in ASAP	Details
hca sc	Mapping the temporal and spatial dynamics of the human endometrium in vivo an... Publication DOI 2b38025d-a5ea-4c0f-b22e-367824bcaf4c::fbd315f7-fd65-46a4-9b5f-e5cf90fc6a4b Homo sapiens	—	mtx 82.5 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM244.QJFT.664 Homo sapiens	—	h5ad 82.6 MB	Not in ASAP	Details
hubmap sc	RNAseq [Salmon] data from the lung (right) of a 37-year-old black or african ... HBM864.CWHJ.963 Homo sapiens	—	h5ad 82.6 MB	Not in ASAP	Details